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Case sensitive directory names in Ubtunu #1

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jlerman44 opened this issue Oct 20, 2014 · 1 comment
Closed

Case sensitive directory names in Ubtunu #1

jlerman44 opened this issue Oct 20, 2014 · 1 comment

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@jlerman44
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Minor issue here - will send a pull request one I resolve someother linux-specific issues.

GenBank vs. genbank in loading/component_loading.py causes some issues for Ubuntu users.

@@ -317,7 +317,8 @@ def load_genome(genbank_file, base, components, debug=False):

 session = base.Session()
 try:
  •  gb_file = SeqIO.read(settings.data_directory+'/annotation/GenBank/'+genbank_file,'gb')
    
  •  print settings.data_directory+'/annotation/GenBank/'+genbank_file
    
  •  gb_file = SeqIO.read(settings.data_directory+'/annotation/genbank/'+genbank_file,'gb')
    
@steve-federowicz
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Ahhh k, awesome. I think @aebrahim ran into this one as well. I did a partial test run on Ubuntu 14.04 but didn't make it all the way through.

zakandrewking pushed a commit that referenced this issue Feb 1, 2017
Update component_loading.py
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