README.md

1kgp-pgx-paper

Data and code repository for the 1KGP PGx paper

Carissa A. Sherman, Katrina G. Claw, and Seung-been Lee. Pharmacogenetic analysis of structural variation in the 1000 genomes project using whole genome sequences. Scientific Reports. Published: 2024-10-01. DOI: https://doi.org/10.1038/s41598-024-73748-3.

To obtain individual SV calls made by PyPGx, and corresponding copy number profiles and allele fraction profiles, please visit the sv-tables directory or select one of the following genes:

1. CYP2A6
2. CYP2B6
3. CYP2D6
4. CYP2E1
5. CYP4F2
6. G6PD
7. GSTM1
8. SLC22A2
9. SULT1A1
10. UGT1A4
11. UGT2B15
12. UGT2B17