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.travis.yml
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.travis.yml
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language: python
addons:
apt:
packages:
- python-pip
sudo: true
cache:
directories:
- $TRAVIS_BUILD_DIR/data/input
os: linux
compiler:
- gcc
before_install:
- sudo sed -i -e 's/^Defaults\tsecure_path.*$//' /etc/sudoers
- cd /tmp && git clone -b development https://www.github.com/singularityware/singularity.git && cd singularity
- sudo apt-get update && sudo apt-get install -y squashfs-tools
- echo $PWD && ls
- ./autogen.sh && ./configure --prefix=/usr/local && make && sudo make install
- cd $TRAVIS_BUILD_DIR/
install:
- sudo singularity build container.ftw Singularity
script:
- singularity run -B data/input:/data/input -B $TRAVIS_BUILD_DIR/analysis:/code --pwd /code container.ftw
- singularity exec -B data/input:/data/input -B $TRAVIS_BUILD_DIR/analysis:/code --pwd /code container.ftw python -m unittest discover -s /code/tests/ -p '[t|T]est*.py'
# An example for how to deploy result to surge.sh
# https://surge.sh/help/integrating-with-circleci
#deploy:
# provider: surge
# project: ./results/
# domain: containers-ftw.surge.sh