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Fix doctests and let TravisCI run doctests #811

Merged
merged 75 commits into from
Nov 18, 2013
Merged

Fix doctests and let TravisCI run doctests #811

merged 75 commits into from
Nov 18, 2013

Commits on Nov 3, 2013

  1. Add make instruction for doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  2. Let travis run doctests

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  3. Fix corner doc tests

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  4. Fix corner_subpix function for corners near border

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  5. Add example for corner_subpix function

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  6. Fix doctest of remove_small_objects

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  7. Fix watershed doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  8. Fix hough_line_peaks doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  9. Fix block_reduce doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  10. Fix RANSAC doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  11. Use NORMALIZE_WHITESPACE directive for block_reduce doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  12. Fix montage2d doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  13. Remove plotter from doctest and use comparison to np.histogram instead

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  14. Fix precision of output in hough_line_peaks doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  15. Install nose from PyPI

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  16. Remove unnecessary coverage directive

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  17. Install PyQt4 for doctests

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  18. Install Cython from apt

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  19. Fix PyQt4 for python 3

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  20. Install xserver

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  21. Install Cython via pip

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  22. Use xvfb rather than xorg

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  23. Do not change into a separate directory for testing

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  24. Build extensions in-place

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  25. Fix duplicate percentile names rank namespace

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  26. Fix duplicate find_contours names in namespace

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  27. Remove numpy prefix from pad function examples

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  28. Skip ransac doctests

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  29. Only build in-place

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  30. Update bento.info

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  31. Fix novice doctests

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  32. Fix multi image doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  33. Explicitly cast window extent to integer for python 3

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  34. Fix novice doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  35. Fix corner_foerstner doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  36. Fix python 3 syntax error

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  37. Also run doc tests for files with a leading underscore

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  38. Temporarily disable brief test cases and ignore test files with a lea… 

    …ding underscore
    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  39. Fix rank order doc test

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  40. Fix marching_cubes doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  41. Fix regionprops doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  42. Fix medial_axis and skeletonize doctests

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  43. Fix geometric doctests

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  44. Fix downscale_local_means doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  45. Fix hough_line_peaks doctest

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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  46. Fix data type issue in python 3

    @ahojnnes
    ahojnnes committed Nov 3, 2013
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Commits on Nov 4, 2013

  1. Improve usage of doctest directives

    @ahojnnes
    ahojnnes committed Nov 4, 2013
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  2. Use a better way to comment out the brief examples temporarily

    @ahojnnes
    ahojnnes committed Nov 4, 2013
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  3. Revert ellipsis to skip directive

    @ahojnnes
    ahojnnes committed Nov 4, 2013
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Commits on Nov 7, 2013

  1. Use travis-ci python config

    @ahojnnes
    ahojnnes committed Nov 7, 2013
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  2. Discard pip installation and install matplotlib from PyPI

    @ahojnnes
    ahojnnes committed Nov 7, 2013
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Commits on Nov 8, 2013

  1. Simplify travis config

    @ahojnnes
    ahojnnes committed Nov 8, 2013
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Commits on Nov 9, 2013

  1. Touch non-existent matplotlibrc

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  2. Fix matplotlibrc configuration

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  3. Add python 2.6 and 3.3 environments

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  4. Remove python 2.6 and 3.3

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  5. Cast label_field to integer dtype for float intput

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  6. Fix label2rgb bug

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  7. Fix misspelled sections

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  8. Fix doc string syntax errors

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  9. Reduce runtime of daisy visualization test case

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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  10. Reduce runtime of radon test cases

    @ahojnnes
    ahojnnes committed Nov 9, 2013
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Commits on Nov 12, 2013

  1. Explicitly set sigma value to 0 to avoid warning

    @ahojnnes
    ahojnnes committed Nov 12, 2013
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  2. Skip show commands for doc tests

    @ahojnnes
    ahojnnes committed Nov 12, 2013
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Commits on Nov 15, 2013

  1. Add note about disabled doctests

    @ahojnnes
    ahojnnes committed Nov 15, 2013
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  2. Enable doc tests of ransac function

    @ahojnnes
    ahojnnes committed Nov 15, 2013
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Commits on Nov 18, 2013

  1. Add doctest function to skimage

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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  2. Use skimage test functions instead of nose commandline

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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  3. Add --exe directive to doc test

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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  4. Return correct exit code for tests

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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  5. Make sure stdlib io is not shadowed by skimage.io

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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  6. Skip failing ransac doctest

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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  7. Reduce runtime of long doctests

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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  8. Fix indentation

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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  9. Use explicit interger division

    @ahojnnes
    ahojnnes committed Nov 18, 2013
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