Merge pull request #1000 from AlexVCaron/hotfix

[FIX] Typo in scil_dti_metrics script
scilus · Jun 21, 2024 · 920ec63 · 920ec63
2 parents cb9ef7c + 0f4d6e0
commit 920ec63
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diff --git a/scripts/scil_dti_metrics.py b/scripts/scil_dti_metrics.py
@@ -305,7 +305,7 @@ def main():
 
         del tensor_vals, fiber_tensors, tensor_vals_reordered
 
-    if args.fa or args.RGB:
+    if args.fa or args.rgb:
         FA = fractional_anisotropy(tenfit.evals)
         FA[np.isnan(FA)] = 0
         FA = np.clip(FA, 0, 1)

diff --git a/scripts/tests/test_dti_metrics.py b/scripts/tests/test_dti_metrics.py
@@ -43,3 +43,8 @@ def test_execution_processing(script_runner, monkeypatch):
                             in_bval, in_bvec, '--not_all',
                             '--fa', 'fa.nii.gz', '--b0_threshold', '1', '-f')
     assert not ret.success
+
+    ret = script_runner.run('scil_dti_metrics.py', in_dwi,
+                            in_bval, in_bvec, '--not_all',
+                            '--rgb', 'rgb.nii.gz', '-f')
+    assert ret.success