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Devel #141

Merged
merged 27 commits into from
Dec 5, 2022
Merged

Devel #141

merged 27 commits into from
Dec 5, 2022

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MohamadHarastani
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New release notes:

  • Added conda environment for continuousflex in order to simplify the installation procedure and sort out any possible conflicts with other packages and plugins.
  • Improved the documentation and cleaned the code.

mms29 and others added 27 commits September 8, 2022 13:14
@mms29
LAPACK & ARPACK in continuousflex-lib + upgrade LAPACK to 3.10.1 + Ne…
7f266a5 
…w version 2.0 MD-NMMD-Genesis (genesis 1.7.1)
@mms29
LAPACK & ARPACK in continuousflex-lib + upgrade LAPACK to 3.10.1 + Ne…
6ab3cff 
…w version 2.0 MD-NMMD-Genesis (genesis 1.7.1)
@mms29
CMAKE build of LAPACK
1c4c05f
@mms29
viewer pdb fix
405c789
@mms29
cmake 3
b14a7ec
@mms29
GENESIS version 1.1 as 2.0 can not build
55d3aa6
@mms29
Merge branch 'devel' into rv_genesis
de8a153
@mms29
Merge pull request #132 from scipion-em/rv_genesis
660ccc7 
LAPACK ARPACK in continuousflex-org + MD-NMMD-Genesis 2.0 +Fix pdb dim red viewer
@ilyes-hm
fix inference parameters
bb00290
@ilyes-hm
Merge pull request #135 from scipion-em/IH_DeepHEMNMA
326d7e7 
IH Fix inference parameters
@MohamadHarastani
creating conda env for continuousflex and installig the needed libraries
18365c6
@MohamadHarastani
Modified tomoflow to use continuousflex environement instead of scipi…
dc74ce3 
…on environement for optical flow calculation using farneback3d
@MohamadHarastani
adapting tomoflow refinement to use the conda environement
d9579de
@MohamadHarastani
cloning the conda env of scipion to use metadeta and image handler of…
378f135 
… scipion in the continuousflex environment and to make the installation of continuousflex faster
@MohamadHarastani
adapting DeepHEMNNA to work in the continuousflex conda env
377cbc3
@MohamadHarastani
updating the use of nma dataset to nma_v2 to not download two dataset…
ad8ffa8 
…s during testing
@MohamadHarastani
using the library path of continuousflex for nma and genesis installa…
c399f32 
…tion
@MohamadHarastani
linking lapack and arpack to scipion environement
7b9353e
@MohamadHarastani
turning off warnings and setting genesis to install by default
364db5b
@MohamadHarastani
adapting tomoflow animation viewer to work with conda environment
fe43da3
@MohamadHarastani
adding umap to the conda env
28a88eb
@mms29
fix pdb dim red umap + genesis adapted for continuousflex env
cf0e378
@mms29
cleaning the init file
4c3f2d3
@MohamadHarastani
Merge pull request #137 from scipion-em/mh_conda
2dbc88b 
Mh conda
@MohamadHarastani
cleaning up before next release
cd98044
@MohamadHarastani
adjusted the references
7ef829c
@MohamadHarastani
Merge pull request #140 from scipion-em/mh_prerelease
dbba344 
Mh prerelease
@MohamadHarastani
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We can follow up with other minor releases later in case you want to improve the documentation (help files, summaries etc.) of your methods.

mms29
mms29 reviewed Dec 5, 2022
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All good!

@mms29 mms29 self-requested a review December 5, 2022 03:16
@MohamadHarastani MohamadHarastani merged commit 6ce8923 into master Dec 5, 2022
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@mms29 mms29 mms29 approved these changes

@ilyes-hm ilyes-hm Awaiting requested review from ilyes-hm

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@MohamadHarastani @mms29 @ilyes-hm