Backport PR #2414 on branch 1.9.x (matplotlib 3.7 compat) #2419
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Codecov Report
Additional details and impacted files@@ Coverage Diff @@
## 1.9.x #2419 +/- ##
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Coverage ? 71.83%
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Files ? 98
Lines ? 11543
Branches ? 0
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Hits ? 8292
Misses ? 3251
Partials ? 0 |
* Fix using custom layer with highly_variable_genes * Add tests * Add release note * Move release note to correct section
* Add check for number of normalized dispersions In sc.pp.highly_variable_genes() when flavor='cell_ranger' and n_top_genes is set check that enough normalized dispersions have been calculated and if not raise a warning and set n_top_genes to the number of calculated dispersions. Fixes scverse#2230 * Use .size instead of len() * Add test for n_top_genes warning * Add release note * Remove blank line Co-authored-by: Isaac Virshup <ivirshup@gmail.com>
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Backport PR #2414: matplotlib 3.7 compat