-
Notifications
You must be signed in to change notification settings - Fork 594
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
matplotlib 3.7 compat #2414
Merged
Merged
matplotlib 3.7 compat #2414
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Codecov Report
Additional details and impacted files@@ Coverage Diff @@
## master #2414 +/- ##
==========================================
- Coverage 71.80% 0.31% -71.50%
==========================================
Files 98 97 -1
Lines 11542 11477 -65
==========================================
- Hits 8288 36 -8252
- Misses 3254 11441 +8187
|
considering that AxesSubplot defines no methods at all (much less any abstract methods), this does seem like the right solution. |
@meeseeksdev backport to 1.9.x |
meeseeksmachine
pushed a commit
to meeseeksmachine/scanpy
that referenced
this pull request
Feb 16, 2023
ivirshup
added a commit
that referenced
this pull request
Feb 16, 2023
* Backport PR #2414: matplotlib 3.7 compat * fix scrublet * Update visium default plot for matplotlib 3.7 * Update hashsolo docstrings * skip plotting test that changed on mpl 3.7 if mpl < 3.7 is installed * Fix hashsolo docs (again) * update anndata-dev tests to install anndata test deps * Temporarily set warnings as errors to False for doc builds * Release notes * Fix using custom layer with highly_variable_genes (#2302) * Fix using custom layer with highly_variable_genes * Add tests * Add release note * Move release note to correct section * Format release notes * Add check for number of normalized dispersions (#2231) * Add check for number of normalized dispersions In sc.pp.highly_variable_genes() when flavor='cell_ranger' and n_top_genes is set check that enough normalized dispersions have been calculated and if not raise a warning and set n_top_genes to the number of calculated dispersions. Fixes #2230 * Use .size instead of len() * Add test for n_top_genes warning * Add release note * Remove blank line Co-authored-by: Isaac Virshup <ivirshup@gmail.com> --------- Co-authored-by: Isaac Virshup <ivirshup@gmail.com> Co-authored-by: adamgayoso <adamgayoso@users.noreply.github.com> Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com> Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com>
This was referenced Feb 27, 2023
3 tasks
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Fix #2411