matplotlib 3.7 compat #2414
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matplotlib 3.7 compat #2414
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Additional details and impacted files@@ Coverage Diff @@
## master #2414 +/- ##
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- Coverage 71.80% 0.31% -71.50%
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Files 98 97 -1
Lines 11542 11477 -65
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- Hits 8288 36 -8252
- Misses 3254 11441 +8187
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considering that AxesSubplot defines no methods at all (much less any abstract methods), this does seem like the right solution. |
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@meeseeksdev backport to 1.9.x |
meeseeksmachine
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Feb 16, 2023
ivirshup
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Feb 16, 2023
* Backport PR #2414: matplotlib 3.7 compat * fix scrublet * Update visium default plot for matplotlib 3.7 * Update hashsolo docstrings * skip plotting test that changed on mpl 3.7 if mpl < 3.7 is installed * Fix hashsolo docs (again) * update anndata-dev tests to install anndata test deps * Temporarily set warnings as errors to False for doc builds * Release notes * Fix using custom layer with highly_variable_genes (#2302) * Fix using custom layer with highly_variable_genes * Add tests * Add release note * Move release note to correct section * Format release notes * Add check for number of normalized dispersions (#2231) * Add check for number of normalized dispersions In sc.pp.highly_variable_genes() when flavor='cell_ranger' and n_top_genes is set check that enough normalized dispersions have been calculated and if not raise a warning and set n_top_genes to the number of calculated dispersions. Fixes #2230 * Use .size instead of len() * Add test for n_top_genes warning * Add release note * Remove blank line Co-authored-by: Isaac Virshup <ivirshup@gmail.com> --------- Co-authored-by: Isaac Virshup <ivirshup@gmail.com> Co-authored-by: adamgayoso <adamgayoso@users.noreply.github.com> Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com> Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com>
This was referenced Feb 27, 2023
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Fix #2411