Skip to content

Issues: scverse/spatialdata

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

159 Open 168 Closed
159 Open 168 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Workaround to use aggregate on elements of different shapes?
#618 opened Jul 5, 2024 by tsvvas
2
get_element_instances and get_centroids should not (?) return zero element
#614 opened Jul 4, 2024 by giovp
4
numpy 2.0.0 support
#602 opened Jun 26, 2024 by LucaMarconato
Issue with aggregation when .attrs is replaced instead of .attrs['transform']
#600 opened Jun 25, 2024 by LucaMarconato
1 task done
check on c_coords should be one the output data in map_raster
#597 opened Jun 24, 2024 by giovp
11
multiprocessing for dataloader
#590 opened Jun 18, 2024 by xiao233333
2
Invalid shapes during vectorization
#583 opened Jun 12, 2024 by quentinblampey
sdata does not save when chunks are not equal
#581 opened Jun 12, 2024 by lotte-vandevreken
Optimize writing performance for MultiscaleSpatialImage topic: IO
#577 opened Jun 11, 2024 by LucaMarconato
1
MultiScaleImage datatree.DataTree attrs in sdata object lost when writing to disk
#576 opened Jun 11, 2024 by simone-codeluppi
8
Querying points doesn't filter the associated table topic: points Points in space topic: query
#567 opened May 24, 2024 by LucaMarconato
1
polygon_query() with filter_table=True on labels should filter the table. topic: query
#564 opened May 23, 2024 by LucaMarconato
Test aggregation of vector data by vector data when agg_func is a list of str topic: aggregation
#561 opened May 16, 2024 by LucaMarconato
Subset spatialdata by list of cell ids
#556 opened May 1, 2024 by RAC1924
4
Unknown normalization when rendering crops from spatial samples.
#553 opened Apr 29, 2024 by rushin682
2
polygon_query() throws AttributeError: 'NoneType' object has no attribute 'intersects' error
#552 opened Apr 28, 2024 by olivermccallion
1
Something wrong about annotating regions of interest with napari
#551 opened Apr 25, 2024 by Tony4709
1
Extract Image features from VisiumHD and Squidpy
#548 opened Apr 19, 2024 by sokratiag
2
Overlay custom shape onto cell boundaries from Xenium
#547 opened Apr 17, 2024 by EST09
2
Cannot aggregate Labels2DModel by ShapesModel
#546 opened Apr 17, 2024 by GuoshengMa
1
Feedback on concatenate()
#541 opened Apr 8, 2024 by grst
1
Parameter name (target_|to_)?coordinate_system(s)?
#534 opened Apr 3, 2024 by LucaMarconato
Mixed polygon/multipolygon geometry types from disk topic: IO topic: Shapes Shapes
#529 opened Mar 30, 2024 by LucaMarconato
Raster models validation should be a classmethod. topic: images Pictures of stuff topic: labels Regions as pixel masks
#528 opened Mar 30, 2024 by LucaMarconato
Missing dtype validation for labels? topic: labels Regions as pixel masks
#527 opened Mar 30, 2024 by LucaMarconato
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.