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50 Open 434 Closed
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Issues list

Working on 3D segmentation matrix
#861 opened Jul 29, 2024 by rsemeraro
@giovp
import problems after installing with 'squidpy[interactive]'
#860 opened Jul 26, 2024 by Zaf4
@michalk8
Invalid RGBA argument when use sq.pl.co_occurrence plot 🌺 related to plotting
#855 opened Jul 23, 2024 by Donbbit
@giovp
1
Image analysis functionality enhancement ✨ New feature or request image 🔬 squidpy2.0 Everything releated to a Squidpy 2.0 release
#850 opened Jul 10, 2024 by timtreis
squidpy.im.ImageContainer cannot process some pyramid tiff (with z > 1) image 🔬 sdata compat 🌌
#848 opened Jul 8, 2024 by gdurif
@michalk8
2
obsm (spatial, spatial_fov) size seems unreasonably large. question ❓ Further information is requested
#846 opened Jun 26, 2024 by JonatanSahar
@michalk8
1
UnidentifiedImageError when reading in Nanostring CosMx Data I/O 💿
#845 opened Jun 26, 2024 by keiven-kun
@giovp
2
Documentation of spatial_scatter doc Improvements or additions to documentation maint 🏗️
#844 opened Jun 21, 2024 by schae211
1
Analyze Visium H&E data with h5ad question ❓ Further information is requested
#841 opened Jun 13, 2024 by asmlgkj
@michalk8
4
After removing rows with only NaN interactions, none remain. graph 🕸️
#840 opened Jun 12, 2024 by asmlgkj
@michalk8
4
var_by_distance using polygons annotations enhancement ✨ New feature or request graph 🕸️
#837 opened Jun 11, 2024 by giovp
@LLehner
Vizgen-MERFISH multiple dataset integration/comparison good first issue Good for newcomers question ❓ Further information is requested
#835 opened Jun 7, 2024 by HSvitina
@giovp
neigh_correct when computing spatial graph graph 🕸️
#834 opened Jun 4, 2024 by wangjiawen2013
@giovp
1
Sliding window across spatial neighbourhood question ❓ Further information is requested
#829 opened May 22, 2024 by FrancescaDr
1
4
calculate_image_features() error with tutorial data image 🔬
#826 opened May 14, 2024 by kimsjune
@michalk8
2
Stacking XYZ dimension images of mouse brain into 3D Volume 3d 🧊 image 🔬
#825 opened May 8, 2024 by sleepingcat4
@giovp
sort_order for pl.spatial_scatter plot 🌺 related to plotting
#824 opened May 4, 2024 by JBreunig
1
Clustering according to image features graph 🕸️
#822 opened Apr 25, 2024 by gboscagli
@giovp
sq.gr.ligrec crashing kernel/script with VisiumHD (>100k spots/spatial barcodes) - Squidpy incompatible with single-cell level spatial technologies? diff analysis 📊 graph 🕸️ speed up 🏃
#819 opened Apr 18, 2024 by Rafael-Silva-Oliveira
@michalk8
4
Ripley L measure with n_observations diff analysis 📊 graph 🕸️
#813 opened Mar 25, 2024 by georgezakinih
@giovp
The Kernel crashed while executing code in the current cell graph 🕸️ speed up 🏃
#812 opened Mar 22, 2024 by spatts14
@giovp
3
EuroPython talk that can give feature insights to SquidPy plot 🌺 related to plotting sdata compat 🌌
#800 opened Feb 15, 2024 by inaciomdrs
2
NaN value when importing Visium dataset I/O 💿 sdata compat 🌌
#797 opened Feb 6, 2024 by Lem-P
@michalk8
11
sq.pl.spatial_scatter return_ax = True not working plot 🌺 related to plotting
#791 opened Jan 11, 2024 by parser-algebra-0m
@giovp
Allow for spatial perturbation screen analysis diff analysis 📊 squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release
#790 opened Jan 8, 2024 by timtreis
6
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