Read Vizgen Cell Metadata not compatible with updated formats

[cornhundred]

Description

The read.vizgen method is not compatible with an update to the cell metadata format from Vizgen (see https://vizgen.github.io/vizgen-postprocessing/output_data_formats/entity_metadata_format.html)

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Minimal reproducible example

>>> adata = sq.read.vizgen('Mouse_Brain_Showcase/', counts_file = 'cell_by_gene.csv', meta_file = 'cell_metadata.csv')

Traceback

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File ".../Documents/squidpy/squidpy/read/_read.py", line 162, in vizgen
    coords.columns = ["fov", "volume", "center_x", "center_y", "min_x", "max_x", "min_y", "max_y"]
  File ".../anaconda3/envs/squidpy_contribute/lib/python3.9/site-packages/pandas/core/generic.py", line 5915, in __setattr__
    return object.__setattr__(self, name, value)
  File "pandas/_libs/properties.pyx", line 69, in pandas._libs.properties.AxisProperty.__set__
  File ".../anaconda3/envs/squidpy_contribute/lib/python3.9/site-packages/pandas/core/generic.py", line 823, in _set_axis
    self._mgr.set_axis(axis, labels)
  File ".../anaconda3/envs/squidpy_contribute/lib/python3.9/site-packages/pandas/core/internals/managers.py", line 230, in set_axis
    self._validate_set_axis(axis, new_labels)
  File ".../anaconda3/envs/squidpy_contribute/lib/python3.9/site-packages/pandas/core/internals/base.py", line 70, in _validate_set_axis
    raise ValueError(
ValueError: Length mismatch: Expected axis has 12 elements, new values have 8 elements

...

Version

>>> sq.__version__
'1.2.3'