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Stephen/spaceranger2.0 #583

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merged 4 commits into from Aug 2, 2022
Merged

Stephen/spaceranger2.0 #583

merged 4 commits into from Aug 2, 2022

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stephenwilliams22
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@stephenwilliams22 stephenwilliams22 commented Jul 19, 2022

IMPORTANT: Please search among the Pull requests before creating one.

Description

This PR updates squidpy to accommodate the latest changes made in spaceranger 2.0 which will break the released version of squidpy. Will provide backwards compatibility to pre 2.0 releases.

How has this been tested?

Closes

closes #584

@michalk8 michalk8 added the bugfix PR fixes a bug label Aug 2, 2022
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michalk8 commented Aug 2, 2022

Tests are crashing for some reason, similarly as in #580 . Will be dealt with in a separate PR, closing this. Thanks @stephenwilliams22 !

@michalk8 michalk8 merged commit 03ee8fa into scverse:main Aug 2, 2022
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Spaceranger output tissue_positions_list.csv renamed?
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