Split linting and testing job

[michalk8]

IMPORTANT: Please search among the Pull requests before creating one.

Description

Use separate linting job on the CI instead as a step. Fix documentation.

How has this been tested?

N/A

Closes

N/A

[giovp]

@michalk8 what I'd also like to do is using the pre-commit CI job actually, but apparently it has a ~100Mb limit and so can't use all mypy dependencies. Do you think we could drop some?

[michalk8]

@michalk8 what I'd also like to do is using the pre-commit CI job actually, but apparently it has a ~100Mb limit and so can't use all mypy dependencies. Do you think we could drop some?

Not sure what the added benefit is, tbh.

[giovp]

@michalk8
do you have any clue why backreferencing in docs is broken?

Details

/gen_modules/backreferences/squidpy.datasets.four_i.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.imc.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.merfish.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.mibitof.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.seqfish.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.slideseqv2.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.visium_fluo_adata.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.visium_fluo_adata_crop.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.visium_fluo_image_crop.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.visium_hne_adata.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.visium_hne_adata_crop.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.visium_hne_image.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.datasets.visium_hne_image_crop.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.centrality_scores.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.co_occurrence.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.interaction_matrix.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.ligrec.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.nhood_enrichment.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.ripley.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.sepal.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.spatial_autocorr.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.gr.spatial_neighbors.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.im.calculate_image_features.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.im.process.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.im.segment.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.centrality_scores.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.co_occurrence.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.extract.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.interaction_matrix.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.ligrec.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.nhood_enrichment.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.ripley.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.spatial_scatter.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.pl.spatial_segment.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.im.ImageContainer.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.im.SegmentationCustom.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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/gen_modules/backreferences/squidpy.im.SegmentationWatershed.examples:3: WARNING: Problem with "start-after" option of "include" directive:
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[michalk8]

@michalk8
do you have any clue why backreferencing in docs is broken?

I think this is one of the extensions (to go to src code -> docs and back), but otherwise no idea.