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Feat/autocorr obs #664

Merged
merged 6 commits into from Mar 23, 2023
Merged

Feat/autocorr obs #664

merged 6 commits into from Mar 23, 2023

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michalk8
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Description

Add attr option to :func:squidpy.gr.spatial_autocorr to select values from :attr:anndata.AnnData.obs or :attr:anndata.AnnData.obsm.

How has this been tested?

1 new test.

Closes

closes #653

@michalk8 michalk8 added the enhancement ✨ New feature or request label Mar 11, 2023
@michalk8 michalk8 self-assigned this Mar 11, 2023
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codecov-commenter commented Mar 11, 2023

Codecov Report

Merging #664 (c847423) into main (fa4365d) will decrease coverage by 0.01%.
The diff coverage is 80.64%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #664      +/-   ##
==========================================
- Coverage   78.58%   78.57%   -0.01%     
==========================================
  Files          31       31              
  Lines        4468     4490      +22     
  Branches      858      865       +7     
==========================================
+ Hits         3511     3528      +17     
- Misses        704      707       +3     
- Partials      253      255       +2     
Impacted Files Coverage Δ
squidpy/gr/_ppatterns.py 82.00% <80.64%> (-0.49%) ⬇️

@michalk8 michalk8 requested a review from giovp March 11, 2023 15:42
@giovp giovp requested a review from LLehner March 21, 2023 16:45
@michalk8 michalk8 merged commit ee9d407 into scverse:main Mar 23, 2023
7 checks passed
@michalk8 michalk8 deleted the feat/autocorr-obs branch March 23, 2023 21:03
michalk8 added a commit that referenced this pull request Mar 23, 2023
@michalk8 michalk8 restored the feat/autocorr-obs branch March 23, 2023 21:06
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autocorrelation with values from obs
2 participants