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Feat/autocorr obs #672

Merged
merged 16 commits into from Apr 2, 2023
Merged

Feat/autocorr obs #672

merged 16 commits into from Apr 2, 2023

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michalk8
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IMPORTANT: Please search among the Pull requests before creating one.

Description

Add attr option to :func:squidpy.gr.spatial_autocorr to select values from :attr:anndata.AnnData.obs or :attr:anndata.AnnData.obsm.

How has this been tested?

1 new test.

Closes

closes #653

@michalk8 michalk8 self-assigned this Mar 23, 2023
@michalk8 michalk8 requested review from giovp and LLehner March 23, 2023 21:08
@michalk8 michalk8 added the enhancement ✨ New feature or request label Mar 23, 2023
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codecov-commenter commented Mar 23, 2023

Codecov Report

Merging #672 (a3fdef8) into main (21436bc) will decrease coverage by 0.01%.
The diff coverage is 84.21%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #672      +/-   ##
==========================================
- Coverage   78.56%   78.56%   -0.01%     
==========================================
  Files          31       31              
  Lines        4470     4492      +22     
  Branches      858      865       +7     
==========================================
+ Hits         3512     3529      +17     
- Misses        705      708       +3     
- Partials      253      255       +2     
Impacted Files Coverage Δ
squidpy/gr/_ligrec.py 77.81% <ø> (ø)
squidpy/gr/_ppatterns.py 82.00% <81.81%> (-0.49%) ⬇️
squidpy/gr/_build.py 87.01% <100.00%> (ø)
squidpy/gr/_nhood.py 82.75% <100.00%> (ø)
squidpy/gr/_sepal.py 52.27% <100.00%> (ø)
squidpy/im/_container.py 85.42% <100.00%> (ø)
squidpy/pl/_utils.py 49.12% <100.00%> (ø)

@LLehner
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LLehner commented Apr 2, 2023

Thank you for the PR @michalk8. We think about removing towncrier and change how release notes are generated so I added them manually here.

@LLehner LLehner merged commit 0cd835d into scverse:main Apr 2, 2023
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autocorrelation with values from obs
3 participants