Update template to v0.3.1

[scverse-bot]

cookiecutter-scverse released v0.3.1.

Changes

Enhancements

• Use Ruff formatting, run Ruff on notebooks by @flying-sheep in Use Ruff formatting, run Ruff on notebooks cookiecutter-scverse#256

Fixes

• Unpin node version, pre-commit autoupdate by @pre-commit-ci in Unpin node version, pre-commit autoupdate cookiecutter-scverse#255
• Fix copy without render by @grst in Fix copy without render cookiecutter-scverse#263
• Fix Ruff deprecations by @flying-sheep in Fix Ruff deprecations cookiecutter-scverse#267

Documentation

• Update contributing.md by @grst in Update contributing.md cookiecutter-scverse#259

Full Changelog: scverse/cookiecutter-scverse@v0.3.0...v0.3.1

Additional remarks

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  add skip: true to template-repos.yml using a PR or,
  if you never want to sync from the template again, delete your .cruft file.
• If there are merge conflicts,
  they either show up inline (>>>>>>>) or a .rej file will have been created for the respective files.
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• The scverse template works best when the pre-commit.ci, readthedocs and codecov services are enabled.
  Make sure to activate those apps if you haven't already.

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 95.65217% with 3 lines in your changes are missing coverage. Please review.

Project coverage is 70.00%. Comparing base (0485aef) to head (1728174).

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #806      +/-   ##
==========================================
+ Coverage   69.83%   70.00%   +0.16%     
==========================================
  Files          39       39              
  Lines        5497     5528      +31     
  Branches     1034     1031       -3     
==========================================
+ Hits         3839     3870      +31     
- Misses       1363     1366       +3     
+ Partials      295      292       -3     

Files	Coverage Δ
src/squidpy/_constants/_constants.py	100.00% <100.00%> (ø)
src/squidpy/_constants/_pkg_constants.py	93.89% <100.00%> (+0.04%)	⬆️
src/squidpy/_constants/_utils.py	95.23% <100.00%> (+0.11%)	⬆️
src/squidpy/_utils.py	56.57% <100.00%> (+0.28%)	⬆️
src/squidpy/datasets/_dataset.py	100.00% <100.00%> (ø)
src/squidpy/datasets/_image.py	100.00% <100.00%> (ø)
src/squidpy/datasets/_utils.py	79.77% <100.00%> (+0.46%)	⬆️
src/squidpy/gr/_build.py	86.25% <100.00%> (ø)
src/squidpy/gr/_ligrec.py	76.45% <100.00%> (+0.08%)	⬆️
src/squidpy/gr/_nhood.py	77.50% <100.00%> (+0.14%)	⬆️
... and 21 more