Merge pull request #2040 from h-2/release-prep-2.3.2

Release prep 2.3.2
seqan · Feb 20, 2017 · d80e19a · d80e19a
2 parents 9560e52 + 0a0faa5
commit d80e19a
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Showing 29 changed files with 29 additions and 29 deletions.
diff --git a/apps/alf/CMakeLists.txt b/apps/alf/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_alf CXX)
 message (STATUS "Configuring apps/alf")
 
-set (SEQAN_APP_VERSION "1.1.8")
+set (SEQAN_APP_VERSION "1.1.9")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/bs_tools/CMakeLists.txt b/apps/bs_tools/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_bs_tools CXX)
 message (STATUS "Configuring apps/bs_tools")
 
-set (SEQAN_APP_VERSION "0.1.8")
+set (SEQAN_APP_VERSION "0.1.9")
 
 if ((${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD") AND ("$ENV{MODEL}" STREQUAL "Nightly"))
     message (STATUS "bs_tools skipped on FreeBSD because math.h rounding errors.")

diff --git a/apps/dfi/CMakeLists.txt b/apps/dfi/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_dfi CXX)
 message (STATUS "Configuring apps/dfi")
 
-set (SEQAN_APP_VERSION "2.1.8")
+set (SEQAN_APP_VERSION "2.1.9")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/fiona/CMakeLists.txt b/apps/fiona/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_fiona CXX)
 message (STATUS "Configuring apps/fiona")
 
-set (SEQAN_APP_VERSION "0.2.8")
+set (SEQAN_APP_VERSION "0.2.9")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/fx_tools/CMakeLists.txt b/apps/fx_tools/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_fx_tools CXX)
 message (STATUS "Configuring apps/fx_tools")
 
-set (SEQAN_APP_VERSION "0.2.8")
+set (SEQAN_APP_VERSION "0.2.9")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/gustaf/CMakeLists.txt b/apps/gustaf/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_gustaf CXX)
 message (STATUS "Configuring apps/gustaf")
 
-set (SEQAN_APP_VERSION "1.0.8")
+set (SEQAN_APP_VERSION "1.0.9")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/insegt/CMakeLists.txt b/apps/insegt/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_insegt CXX)
 message (STATUS "Configuring apps/insegt")
 
-set (SEQAN_APP_VERSION "1.1.8")
+set (SEQAN_APP_VERSION "1.1.9")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/mason2/CMakeLists.txt b/apps/mason2/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_mason2 CXX)
 message (STATUS "Configuring apps/mason2")
 
-set (SEQAN_APP_VERSION "2.0.7")
+set (SEQAN_APP_VERSION "2.0.8")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/micro_razers/CMakeLists.txt b/apps/micro_razers/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_micro_razers CXX)
 message (STATUS "Configuring apps/micro_razers")
 
-set (SEQAN_APP_VERSION "1.0.9")
+set (SEQAN_APP_VERSION "1.0.10")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/ngs_roi/CMakeLists.txt b/apps/ngs_roi/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_ngs_roi CXX)
 message (STATUS "Configuring apps/ngs_roi")
 
-set (SEQAN_APP_VERSION "0.2.10")
+set (SEQAN_APP_VERSION "0.2.11")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/pair_align/CMakeLists.txt b/apps/pair_align/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_pair_align CXX)
 message (STATUS "Configuring apps/pair_align")
 
-set (SEQAN_APP_VERSION "1.3.6")
+set (SEQAN_APP_VERSION "1.3.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/param_chooser/CMakeLists.txt b/apps/param_chooser/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_param_chooser CXX)
 message (STATUS "Configuring apps/param_chooser")
 
-set (SEQAN_APP_VERSION "0.0.7")
+set (SEQAN_APP_VERSION "0.0.8")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/rabema/CMakeLists.txt b/apps/rabema/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_rabema CXX)
 message (STATUS "Configuring apps/rabema")
 
-set (SEQAN_APP_VERSION "1.2.8")
+set (SEQAN_APP_VERSION "1.2.9")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/razers/CMakeLists.txt b/apps/razers/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_razers CXX)
 message (STATUS "Configuring apps/razers")
 
-set (SEQAN_APP_VERSION "1.5.6")
+set (SEQAN_APP_VERSION "1.5.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/razers3/CMakeLists.txt b/apps/razers3/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_razers3 CXX)
 message (STATUS "Configuring apps/razers3")
 
-set (SEQAN_APP_VERSION "3.5.6")
+set (SEQAN_APP_VERSION "3.5.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/rep_sep/CMakeLists.txt b/apps/rep_sep/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_rep_sep CXX)
 message (STATUS "Configuring apps/rep_sep")
 
-set (SEQAN_APP_VERSION "0.1.9")
+set (SEQAN_APP_VERSION "0.1.10")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/sak/CMakeLists.txt b/apps/sak/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_sak CXX)
 message (STATUS "Configuring apps/sak")
 
-set (SEQAN_APP_VERSION "0.4.6")
+set (SEQAN_APP_VERSION "0.4.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/sam2matrix/CMakeLists.txt b/apps/sam2matrix/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_sam2matrix CXX)
 message (STATUS "Configuring apps/sam2matrix")
 
-set (SEQAN_APP_VERSION "0.3.6")
+set (SEQAN_APP_VERSION "0.3.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/samcat/CMakeLists.txt b/apps/samcat/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_samcat CXX)
 message (STATUS "Configuring apps/samcat")
 
-set (SEQAN_APP_VERSION "0.3.6")
+set (SEQAN_APP_VERSION "0.3.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/searchjoin/CMakeLists.txt b/apps/searchjoin/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_searchjoin CXX)
 message (STATUS "Configuring apps/searchjoin")
 
-set (SEQAN_APP_VERSION "0.5.6")
+set (SEQAN_APP_VERSION "0.5.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/seqan_tcoffee/CMakeLists.txt b/apps/seqan_tcoffee/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_seqan_tcoffee CXX)
 message (STATUS "Configuring apps/seqan_tcoffee")
 
-set (SEQAN_APP_VERSION "1.13.6")
+set (SEQAN_APP_VERSION "1.13.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/seqcons2/CMakeLists.txt b/apps/seqcons2/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_seqcons2 CXX)
 message (STATUS "Configuring apps/seqcons2")
 
-set (SEQAN_APP_VERSION "2.0.7")
+set (SEQAN_APP_VERSION "2.0.8")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/sgip/CMakeLists.txt b/apps/sgip/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_sgip CXX)
 message (STATUS "Configuring apps/sgip")
 
-set (SEQAN_APP_VERSION "1.4.6")
+set (SEQAN_APP_VERSION "1.4.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/snp_store/CMakeLists.txt b/apps/snp_store/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_snp_store CXX)
 message (STATUS "Configuring apps/snp_store")
 
-set (SEQAN_APP_VERSION "1.3.6")
+set (SEQAN_APP_VERSION "1.3.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/splazers/CMakeLists.txt b/apps/splazers/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_splazers CXX)
 message (STATUS "Configuring apps/splazers")
 
-set (SEQAN_APP_VERSION "1.3.6")
+set (SEQAN_APP_VERSION "1.3.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/stellar/CMakeLists.txt b/apps/stellar/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_stellar CXX)
 message (STATUS "Configuring apps/stellar")
 
-set (SEQAN_APP_VERSION "1.4.9")
+set (SEQAN_APP_VERSION "1.4.10")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/tree_recon/CMakeLists.txt b/apps/tree_recon/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
 project (seqan_apps_tree_recon CXX)
 message (STATUS "Configuring apps/tree_recon")
 
-set (SEQAN_APP_VERSION "1.4.6")
+set (SEQAN_APP_VERSION "1.4.7")
 
 # ----------------------------------------------------------------------------
 # Dependencies

diff --git a/apps/yara/CMakeLists.txt b/apps/yara/CMakeLists.txt
@@ -46,7 +46,7 @@ endif (NOT BZIP2_FOUND)
 # App-Level Configuration
 # ----------------------------------------------------------------------------
 
-set (SEQAN_APP_VERSION "0.9.9")
+set (SEQAN_APP_VERSION "0.9.10")
 
 option (YARA_LARGE_CONTIGS "Set to OFF to disable support for more than 32k contigs or contigs longer than 4Gbp." ON)
 if (YARA_LARGE_CONTIGS AND NOT SEQAN_TRAVIS_BUILD)

diff --git a/include/seqan/version.h b/include/seqan/version.h
@@ -41,7 +41,7 @@
 
 #define SEQAN_VERSION_MINOR 3
 
-#define SEQAN_VERSION_PATCH 1
+#define SEQAN_VERSION_PATCH 2
 
 #define SEQAN_VERSION_PRE_RELEASE 0