Skip to content

Commit

Permalink
[DOC] Add changelog entry for #2458 (#2495)
Browse files Browse the repository at this point in the history
* [DOC] Add changelog entry for #2458

* Update CHANGELOG.md

Co-authored-by: Lydia Buntrock <irallia@chrigelyra.de>

Co-authored-by: Lydia Buntrock <irallia@chrigelyra.de>
  • Loading branch information
eseiler and Irallia committed Mar 25, 2021
1 parent 25e6eca commit accc85b
Showing 1 changed file with 11 additions and 2 deletions.
13 changes: 11 additions & 2 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -96,6 +96,15 @@ If possible, provide tooling that performs the changes, e.g. a shell-script.
* Requesting the alignment without also requesting the sequence for BAM files containing empty CIGAR strings does now
not result in erroneous parsing ([\#2418](https://github.com/seqan/seqan3/pull/2418)).
* BAM files with 64 references are now parsed correctly ([\#2423](https://github.com/seqan/seqan3/pull/2423)).
* Writing `gz`-compressed output no longer results in `bgzf`-compressed output. This change may have following effects
([\#2458](https://github.com/seqan/seqan3/pull/2458)):
* A noticeable slowdown when writing `gz`-compressed content since, in contrast to `bgzf`, `gz` does not feature
parallelisation (magnitude depends on the application and level of parallelisation).
* A reduced output size when writing `gz`-compressed content due to `gz` storing less metadata than `bgzf`
(up to 20% smaller file size).
* The processed data should experience no negative effects since `gz` and `bgzf` are **fully compatible**.
* This bug may also cause unexpected parallelisation when reading `gz`-compressed input. This is the case when the
`gz`-compressed input was also generated with SeqAn.

## API changes

Expand Down Expand Up @@ -174,8 +183,8 @@ If possible, provide tooling that performs the changes, e.g. a shell-script.
#### Search

* We removed the concepts seqan3::[bi_]fm_index[_cursor]_specialisation. We did this because we currently have only one
implementation modelling each concept and are not completely sure if the current definition of the concepts is the
right one. If you used those concepts, you can check whether the cursor type is seqan3::[bi_]fm_index_cursor as a
implementation modelling each concept and are not completely sure if the current definition of the concepts is the
right one. If you used those concepts, you can check whether the cursor type is seqan3::[bi_]fm_index_cursor as a
substitute. ([\#2348](https://github.com/seqan/seqan3/pull/2348))

# 3.0.2
Expand Down

1 comment on commit accc85b

@vercel
Copy link

@vercel vercel bot commented on accc85b Mar 25, 2021

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Please sign in to comment.