upgraded micronaut to 4

[munishchouhan]

This PR will upgrade micronaut to 4

[munishchouhan]

Getting this error:

11:35:38.638 [main] ERROR io.micronaut.runtime.Micronaut - Error starting Micronaut server: Bean definition [io.seqera.wave.Boostrap] could not be loaded: Error instantiating bean of type  [io.seqera.wave.Boostrap]

Message: Cannot invoke "java.util.Map.get(Object)" because "this.registries" is null
Path Taken: new Boostrap()
io.micronaut.context.exceptions.BeanInstantiationException: Bean definition [io.seqera.wave.Boostrap] could not be loaded: Error instantiating bean of type  [io.seqera.wave.Boostrap]

Message: Cannot invoke "java.util.Map.get(Object)" because "this.registries" is null
Path Taken: new Boostrap()
	at io.micronaut.context.DefaultBeanContext.initializeContext(DefaultBeanContext.java:1979)
	at io.micronaut.context.DefaultApplicationContext.initializeContext(DefaultApplicationContext.java:290)
	at io.micronaut.context.DefaultBeanContext.readAllBeanDefinitionClasses(DefaultBeanContext.java:3337)
	at io.micronaut.context.DefaultBeanContext.finalizeConfiguration(DefaultBeanContext.java:3690)
	at io.micronaut.context.DefaultBeanContext.start(DefaultBeanContext.java:345)
	at io.micronaut.context.DefaultApplicationContext.start(DefaultApplicationContext.java:198)
	at io.micronaut.runtime.Micronaut.start(Micronaut.java:73)
	at io.seqera.wave.Application.main(Application.groovy:41)
Caused by: io.micronaut.context.exceptions.BeanInstantiationException: Error instantiating bean of type  [io.seqera.wave.Boostrap]

Message: Cannot invoke "java.util.Map.get(Object)" because "this.registries" is null
Path Taken: new Boostrap()
	at io.micronaut.context.DefaultBeanContext.resolveByBeanFactory(DefaultBeanContext.java:2322)
	at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2277)
	at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2289)
	at io.micronaut.context.DefaultBeanContext.createRegistration(DefaultBeanContext.java:3056)
	at io.micronaut.context.SingletonScope.getOrCreate(SingletonScope.java:81)
	at io.micronaut.context.DefaultBeanContext.findOrCreateSingletonBeanRegistration(DefaultBeanContext.java:2958)
	at io.micronaut.context.DefaultBeanContext.initializeEagerBean(DefaultBeanContext.java:2676)
	at io.micronaut.context.DefaultBeanContext.initializeContext(DefaultBeanContext.java:1973)
	... 7 common frames omitted
Caused by: java.lang.NullPointerException: Cannot invoke "java.util.Map.get(Object)" because "this.registries" is null
	at io.seqera.wave.auth.RegistryConfig.getRegistryKeys(RegistryConfig.groovy:51)
	at io.seqera.wave.auth.RegistryCredentialsProviderImpl.getDefaultCredentials0(RegistryCredentialsProviderImpl.groovy:82)
	at io.seqera.wave.auth.RegistryCredentialsProviderImpl.getDefaultCredentials(RegistryCredentialsProviderImpl.groovy:71)
	at io.seqera.wave.Boostrap.init(Boostrap.groovy:44)
	at io.seqera.wave.$Boostrap$Definition.initialize(Unknown Source)
	at io.seqera.wave.$Boostrap$Definition.instantiate(Unknown Source)
	at io.micronaut.context.DefaultBeanContext.resolveByBeanFactory(DefaultBeanContext.java:2307)
	... 14 common frames omitted

[munishchouhan]

Issue raised with Micornaut team about unit tests not working as exxpected
micronaut-projects/micronaut-core#10051

[marcodelapierre]

@munishchouhan can you review the suggestion in micronaut-projects/micronaut-core#10051,
to see if it could help for this PR? - thank you

[munishchouhan]

@marcodelapierre it is blocked by seqeralabs/libseqera#7

[marcodelapierre]

I see, thanks Munish.

@pditommaso on Monday let's discuss prioritising the upgrade of Nextflow to Groovy 4

[munishchouhan]

getting error, while running tests

Cannot create mock for class io.seqera.wave.service.aws.AwsEcrService . Mocking of non-interface types requires a code generation library. Please put an up-to-date version of byte-buddy or cglib-nodep on the class path.
org.spockframework.mock.CannotCreateMockException: Cannot create mock for class io.seqera.wave.service.aws.AwsEcrService . Mocking of non-interface types requires a code generation library. Please put an up-to-date version of byte-buddy or cglib-nodep on the class path.
	at org.spockframework.mock.runtime.ProxyBasedMockFactory.create(ProxyBasedMockFactory.java:47)
	at org.spockframework.mock.runtime.JavaMockFactory.createInternal(JavaMockFactory.java:58)
	at org.spockframework.mock.runtime.JavaMockFactory.create(JavaMockFactory.java:38)
	at org.spockframework.mock.runtime.CompositeMockFactory.create(CompositeMockFactory.java:44)
	at org.spockframework.lang.SpecInternals.createMock(SpecInternals.java:50)
	at org.spockframework.lang.SpecInternals.createMockImpl(SpecInternals.java:305)
	at org.spockframework.lang.SpecInternals.createMockImpl(SpecInternals.java:295)
	at org.spockframework.lang.SpecInternals.MockImpl(SpecInternals.java:104)
	at io.seqera.wave.auth.RegistryCredentialsProviderTest.should get credentials from user(RegistryCredentialsProviderTest.groovy:111)

[pditommaso]

@munishchouhan can you please have a look at this conflict? ☝️

[munishchouhan]

@munishchouhan can you please have a look at this conflict? ☝️

sure

[pditommaso]

Managed to upgrade libseqera deps, but many tests still fails. Not sure that's because I've also upgraded to MN 4.4.3 from 4.1.6

[munishchouhan]

Managed to upgrade libseqera deps, but many tests still fails. Not sure that's because I've also upgraded to MN 4.4.3 from 4.1.6

ok sure, I will fix them

[munishchouhan]

Error using wave:

% wave -i ubuntu --wave-endpoint http://localhost:9090
aa0ca0c91267.ngrok.app/wt/f948f4f98162/library/ubuntu:latest

% docker pull  aa0ca0c91267.ngrok.app/wt/f948f4f98162/library/ubuntu:latest
latest: Pulling from wt/f948f4f98162/library/ubuntu
aa21f24e1940: Verifying Checksum
error pulling image configuration: image config verification failed for digest sha256:28bc33afd4c9a541270cdae3de1f78190908ffb34081e40e636fb7fec32434e3