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segment fault/Ubuntu 16.04 #11

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blacksino opened this issue Apr 12, 2019 · 1 comment
Open

segment fault/Ubuntu 16.04 #11

blacksino opened this issue Apr 12, 2019 · 1 comment

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@blacksino
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Hello,I am building up this project.And we met some troubles：after we compiled the code and
ran the executable “CustusX”，it crashed（SegmentFault）。I have no idea about how to handle this..

here is the GDB LOG：

(gdb) bt
#0 0x00007f7c114aef68 in ?? ()
from /home/bme305/Qt5.5.1/5.5/gcc_64/lib/libQt5Core.so.5
#1 0x00007f7c112f6b4c in QString::toUtf8_helper(QString const&) ()
from /home/bme305/Qt5.5.1/5.5/gcc_64/lib/libQt5Core.so.5
#2 0x0000000000a43fde in QString::toUtf8() const & ()
#3 0x0000000000a4402b in QString::toStdStringabi:cxx11 const ()
#4 0x0000000000d5e7c8 in operator<<(std::ostream&, QString const&) ()
#5 0x0000000000d62810 in cx::operator<<(std::ostream&, cx::MESSAGE_LEVEL const&) ()
#6 0x0000000000ab6779 in bool boost::detail::lexical_istream_limited_src<char, std::char_traits, true, 2ul>::shl_input_streamable<cx::MESSAGE_LEVEL const>(cx::MESSAGE_LEVEL const&) ()
#7 0x0000000000ab6527 in bool boost::detail::lexical_istream_limited_src<char, std::char_traits, true, 2ul>::operator<< cx::MESSAGE_LEVEL(cx::MESSAGE_LEVEL const&) ()
#8 0x0000000000ab60ca in boost::detail::lexical_converter_impl<std::__cxx11::basic_string<char, std::char_traits, std::allocator >, cx::MESSAGE_LEVEL>::try_convert(cx::MESSAGE_LEVEL const&, std::__cxx11::basic_string<char, std::char_traits, std::allocator >&) ()
#9 0x0000000000ab59c8 in bool boost::conversion::detail::try_lexical_convert<std::__cxx11::basic_string<char, std::char_traits, std::allocator >, cx::MESSAGE_LEVEL>(cx::MESSAGE_LEVEL const&, std::__cxx11::basic_string<char, std::char_traits, std::allocator >&) ()
---Type to continue, or q to quit---
#10 0x0000000000ab538c in std::__cxx11::basic_string<char, std::char_traits, std::allocator > boost::lexical_cast<std::__cxx11::basic_string<char, std::char_traits, std::allocator >, cx::MESSAGE_LEVEL>(cx::MESSAGE_LEVEL const&) ()
#11 0x0000000000ab463d in std::__cxx11::basic_string<char, std::char_traits, std::allocator > string_castcx::MESSAGE_LEVEL(cx::MESSAGE_LEVEL const&) ()
#12 0x0000000000ab3966 in QString qstring_castcx::MESSAGE_LEVEL(cx::MESSAGE_LEVEL const&) ()
#13 0x0000000000d7a293 in cx::Message::getPrintableMessage() const ()
#14 0x0000000000cee49d in cx::Reporter::sendMessage(cx::Message) ()
#15 0x0000000000d7922f in cx::MessageLogger::~MessageLogger() ()
#16 0x0000000000b7c5ad in cx::PluginFrameworkManager::handlePluginException(QString const&, ctkException const&) ()
#17 0x0000000000b7baf1 in cx::PluginFrameworkManager::install(QString const&)
()
#18 0x0000000000b7a797 in cx::PluginFrameworkManager::loadState() ()
#19 0x0000000000b76202 in cx::LogicManager::initializeServices() ()
#20 0x0000000000b76019 in cx::LogicManager::initialize(boost::shared_ptrcx::ApplicationComponent) ()
#21 0x0000000000a1e1c1 in main ()

MY OS is Ubuntu16.04，LTS;
QT version：5.5.1
cmake log：

-- 'BeforeCMAKE_CXX_FLAGS'

-- 'CX_CMAKE_CXX_FLAGS'

-- 'AfterCMAKE_CXX_FLAGS'

-- DirDefs:

-- The Ninja was used.

-- Setting CX_SYSTEM_BASE_NAME=[CustusX]

-- Setting CX_SYSTEM_DEFAULT_APPLICATION=[CustusX]

fatal: 没有标签准确匹配 '7f1def756e5d44370192c35f3ee7ae6cb3cd65f9'

-- CustusX Alpha Version: 2019.04.11-dev+develop.7f1d

-----------------CX_INSTALL_ROOT_DIR: CustusX

-----------------CX_INSTALL_BINARY_DIR: CustusX/bin

-----------------CX_INSTALL_CONFIG_DIR: CustusX/config

-----------------CX_BUNDLE_NAME: CustusX

-- Boost version: 1.58.0

-- Trying to find DCMTK expecting DCMTKConfig.cmake

-- Trying to find DCMTK expecting DCMTKConfig.cmake - ok

-- Generated: /home/bme305/dev/cx/CX/build_Release/source/plugins/DGraphInput-alldep-withext.txt

-- Checking to see if CXX compiler accepts flag -fvisibility=hidden

-- Checking to see if CXX compiler accepts flag -fvisibility=hidden - yes

-- Generating master Catch exe.

-- Adding tests from:

-- cxtestResource

-- cxtestResourceUsReconstructionTypes

-- cxtestResourceVisualization

-- cxtestOpenIGTLinkUtilities

-- cxtestUtilities

-- cxtestResourceWidgets

-- cxtestGrabber

-- cxtestFilter

-- cxtestLogicManager

-- cxtestGui

-- cxtest_org_custusx_core_patientmodel

-- cxtest_org_custusx_core_view

-- cxtest_org_custusx_core_tracking

-- cxtest_org_custusx_core_tracking_igstk

-- cxtest_org_custusx_core_openigtlink3

-- cxtest_org_custusx_core_video

-- cxtest_org_custusx_core_filemanager

-- cxtest_org_custusx_dicom

-- cxtest_org_custusx_usreconstruction_vnncl

-- cxtest_org_custusx_usreconstruction_pnn

-- cxtest_org_custusx_registration

-- cxtest_org_custusx_registration_method_manual

-- cxtest_org_custusx_registration_method_landmark

-- cxtest_org_custusx_registration_method_bronchoscopy

-- cxtest_org_custusx_registration_method_centerline

-- cxtest_org_custusx_registration_method_commandline

-- cxtest_org_custusx_usreconstruction

-- cxtest_org_custusx_acquisition

-- cxtest_org_custusx_calibration

-- cxtest_org_custusx_help

-- cxtest_org_custusx_filter_accusurf

-- cxtest_org_custusx_ceetron

-- cxtest_org_custusx_filter_airwaysfromcenterline

-- Qt5 plugin directory:/home/bme305/Qt5.5.1/5.5/gcc_64/plugins

-- QT_PLUGINS_DIR: /home/bme305/Qt5.5.1/5.5/gcc_64/plugins

-- QT_LIBS_DIR: /home/bme305/Qt5.5.1/5.5/gcc_64/lib

-- PATTERN=CustusX/bin/*.so

-- PATTERN=CustusX/bin/plugins/*.so

--

Configuration for CustusX 2019.04.11-dev+develop.7f1d

Build Settings:



	System Base Name: CustusX



	Built on system: Linux-4.15.0-43-generic  x86_64



	Build type: 



	Shared Libraries: 



	Coverage: OFF



	Dev docs: OFF



	User docs: ON







Libraries:



	Qt Version 5.5.1



	VTK Version: 7.1.0



	ITK Version: 4.12.0



	CTK Version: 0.1.0



	OpenCV Version: 3.3.0



	CMake Version: 3.12.0



	IGSTK Version: 5.2.0



	OpenIGTLink Version: 3.1.0



	Boost Version: 1.58.0



	OpenCL Version: 



	OpenGL Version:  3.0 Mesa 18.0.5







	Eigen Version: 3.3.5







	OpenCL Utility Library: OFF







Plugins:



	org.custusx.acquisition ON



	org.custusx.calibration ON



	org.custusx.ceetron ON



	org.custusx.core.filemanager ON



	org.custusx.core.openigtlink3 ON



	org.custusx.core.patientmodel ON



	org.custusx.core.state ON



	org.custusx.core.tracking ON



	org.custusx.core.tracking.system.igstk ON



	org.custusx.core.video ON



	org.custusx.core.view ON



	org.custusx.dicom ON



	org.custusx.example OFF



	org.custusx.filter.accusurf ON



	org.custusx.filter.airways OFF



	org.custusx.filter.airwaysfromcenterline ON



	org.custusx.filter.routetotarget ON



	org.custusx.help ON



	org.custusx.registration ON



	org.custusx.registration.gui ON



	org.custusx.registration.method.bronchoscopy ON



	org.custusx.registration.method.centerline ON



	org.custusx.registration.method.commandline ON



	org.custusx.registration.method.landmark ON



	org.custusx.registration.method.manual ON



	org.custusx.registration.method.plate ON



	org.custusx.registration.method.pointcloud ON



	org.custusx.registration.method.vessel ON



	org.custusx.training ON



	org.custusx.usreconstruction ON



	org.custusx.usreconstruction.pnn ON



	org.custusx.usreconstruction.vnncl ON



	org.custusx.virtualbronchoscopy ON



	org.custusx.webserver OFF

-- **** Generating user qthelp documentation...

-- **** Generating user html documentation...

-- Configuring done

CMake Warning (dev) in source/plugins/org.custusx.dicom/CMakeLists.txt:

Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link

interface. Run "cmake --help-policy CMP0022" for policy details. Use the

cmake_policy command to set the policy and suppress this warning.

Target "org_custusx_dicom" has an INTERFACE_LINK_LIBRARIES property which

differs from its LINK_INTERFACE_LIBRARIES properties.

INTERFACE_LINK_LIBRARIES:

CTKPluginFramework;cxGUIExtenderService;cxResourceWidgets;cxResource;CTKDICOMWidgets;CTKDICOMCore;cxPluginUtilities;cxResourceVisualization;Qt5::Core;dl;Qt5::Widgets;Qt5::Xml;Qt5::OpenGL;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmpstat.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmpstat.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmsr.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmsr.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmtls.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmtls.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmqrdb.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmqrdb.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmnet.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmnet.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmjpeg.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmjpeg.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimage.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimage.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimgle.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimgle.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmdata.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmdata.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/liboflog.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/liboflog.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libofstd.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libofstd.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg12.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg12.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg16.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg16.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg8.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg8.so>;-lpthread;Qt5::Sql;Qt5::Gui;vtkCommonCore;vtkCommonDataModel;vtkCommonSystem;vtkIOImage;vtkInteractionStyle;vtkRenderingAnnotation;vtkRenderingCore;vtkRenderingOpenGL2;vtkRenderingFreeType;Qt5::Sql;Qt5::Concurrent

LINK_INTERFACE_LIBRARIES:
CTKPluginFramework;cxGUIExtenderService;cxResourceWidgets;cxResource;CTKDICOMWidgets;CTKDICOMCore;cxPluginUtilities;cxResourceVisualization;Qt5::Core;dl;Qt5::Widgets;Qt5::Xml;Qt5::OpenGL;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmpstat.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmsr.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmtls.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmqrdb.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmnet.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmjpeg.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimage.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimgle.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmdata.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/liboflog.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libofstd.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg12.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg16.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg8.so;-lpthread;Qt5::Sql;Qt5::Gui;vtkCommonCore;vtkCommonDataModel;vtkCommonSystem;vtkIOImage;vtkInteractionStyle;vtkRenderingAnnotation;vtkRenderingCore;vtkRenderingOpenGL2;vtkRenderingFreeType;Qt5::Sql;Qt5::Concurrent

This warning is for project developers. Use -Wno-dev to suppress it.

-- Generating done
-- Build files have been written to: /home/bme305/dev/cx/CX/build_Release

If you need more information，please let me know，we sincerely ask you for help，thanks！
@blacksino blacksino changed the title we are segment fault/Ubuntu 16.04 Apr 12, 2019
@olevs
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olevs commented Apr 16, 2019

The crash looks a bit stange.

  1. Do you get the same error when downloading CustusX (for Ubuntu 16.04) from custusx.org? https://www.custusx.org/uploads/releases/18.04/Linux/ or https://www.custusx.org/uploads/releases/nightly/Linux/
  2. Du you use the the CustusX python installer script when compiling CustusX? https://www.custusx.org/uploads/developer_doc/nightly/build_instructions.html
  3. Can you also provide the command line output (if any) that CustusX prints during startup?
  4. You can also try building CustusX with debug information to get a more detailed call stack.

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@olevs @blacksino