error running

[pavlo888]

Hi @SiWolf

I am trying to run this pipeline but unfortunately I get an error. Any idea how to solve it? I have already added my fasta and gff files to the reference folder and I have updated the metadata file. But i keep getting the same error.

`(score) sam@bioinf-pc:~/Downloads/SCORE$ bash run-SCORE.sh 2 PE
rm: cannot remove '.gz': No such file or directory
rm: cannot remove '.idx': No such file or directory
rm: cannot remove 'kallisto/sample*': No such file or directory
rm: cannot remove '.rda': No such file or directory
rm: cannot remove '.txt': No such file or directory
rm: cannot remove 'consensus*': No such file or directory
rm: cannot remove 'deg*': No such file or directory
rm: cannot remove 'diffexpr*': No such file or directory
rm: cannot remove 'filtered*': No such file or directory
rm: cannot remove 'genes*': No such file or directory
rm: cannot remove 'hmmer*': No such file or directory
rm: cannot remove 'pathway*': No such file or directory
rm: cannot remove 'proteins*': No such file or directory
rm: cannot remove 'transcript*': No such file or directory
rm: cannot remove 'summary*': No such file or directory
rm: cannot remove 'benchmarking*': No such file or directory
rm: cannot remove 'log.txt': No such file or directory
rm: cannot remove 'references/.tmp': No such file or directory
rm: cannot remove '': No such file or directory
rm: cannot remove '': No such file or directory
rm: cannot remove '.sam': No such file or directory
rm: cannot remove '': No such file or directory
rm: cannot remove '': No such file or directory
FileNotFoundError in line 203 of /home/sam/Downloads/SCORE/SCORE_PE.snk:
[Errno 2] No such file or directory: 'references/027-annot.gff'
File "/home/sam/Downloads/SCORE/SCORE_PE.snk", line 218, in
File "/home/sam/Downloads/SCORE/SCORE_PE.snk", line 203, in verfify_id_combination
FileNotFoundError in line 203 of /home/sam/Downloads/SCORE/SCORE_PE.snk:
[Errno 2] No such file or directory: 'references/027-annot.gff'
File "/home/sam/Downloads/SCORE/SCORE_PE.snk", line 218, in
File "/home/sam/Downloads/SCORE/SCORE_PE.snk", line 203, in verfify_id_combination

real 0m0,157s
user 0m0,133s
sys 0m0,025s
`