How to visually display the chromosome ancestry segments?

[mocksu]

I am very glad that I have been able to generate results from rfmix. The 4 result files I have are: *.msp.tsv, *.fb.tsv, *.rfmix.Q, & *.sis.tsv.

My question is how to visually display the chromosome ancestry as https://camo.githubusercontent.com/16128d0371a197faa1fa59e259d38dca5c383136/68747470733a2f2f616c69636961726d617274696e646f74636f6d2e66696c65732e776f726470726573732e636f6d2f323031322f30322f686730323438312e706e673f773d383030 or https://github.com/armartin/ancestry_pipeline/blob/master/README.md if you want to know more about the plot. Is there a software product to do so?

Thanks much!

[mocksu]

I got it resolved by using Alicia R Martin's karyogram plotting script.

[rozaimirazali]

I got it resolved by using Alicia R Martin's karyogram plotting script.

Do you have a link?

[deven-n-vyas]

I got it resolved by using Alicia R Martin's karyogram plotting script.

Hello, did you have to modify the *.msp.tsv, *.fb.tsv, *.rfmix.Q, & *.sis.tsv files to get them to work with that pipeline. I am trying to get it to work with, but I am encountering errors.

[Wei-Chen-Pan]

I got it resolved by using Alicia R Martin's karyogram plotting script.

Hello, did you have to modify the *.msp.tsv, *.fb.tsv, *.rfmix.Q, & *.sis.tsv files to get them to work with that pipeline. I am trying to get it to work with, but I am encountering errors.

Hi, did you resolve the problem and plot the karyogram ? I'm encountering same question. Thanks

[isla214]

Hi did you find answer? I meet the same questions

[alisi1989]

if you are still interested, I am sharing a pipeline to plot chromosomes using RFMIX2 outputs (msp.tsv). will be present on my profile soon.

[alisi1989]

https://github.com/alisi1989/RFmix2-Pipeline-to-plot