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Add HCA data as submodule. Update README (txt ➔ md).
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[submodule "custom-data/raw/hca-fhir-importer"] | ||
path = custom-data/raw/hca-fhir-importer | ||
url = https://github.com/smart-on-fhir/hca-fhir-importer.git |
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SMART on FHIR Test Data Generator | ||
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This generator uses the data files in the `data` directory to generate | ||
FHIR test data. | ||
The files in the data directory are tab-delimited tables that can be edited and extended with new data as needed. | ||
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All the Python scripts are in the `bin` directory, and should be run from | ||
that directory. | ||
This repository contains git submodules to handle 3-rd party sample data, make sure you checkout using the _--recursive_ option. | ||
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The main script for general use is `generate.py`, the other files in `bin` | ||
are basically modules supporting generate.py. | ||
The file `testdata.py` contains most of the constant declarations and utility functions that drive the system configuration. | ||
The file `fhir.py` contains all the FHIR formatting code. | ||
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From the 'bin' directory, run: | ||
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python generate.py --help | ||
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To get a general help message. | ||
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To generate the test data files in the 'generated-data' directory: | ||
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python generate.py --write-fhir ../generated-data | ||
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And a `summary.txt` file can be added to `generated-data` by running: | ||
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python generate.py --summary > ../generated-data/summary.txt | ||
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A good way to look at a single patient, with patient ID, PID, is: | ||
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python generate.py --summary PID |
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Submodule hca-fhir-importer
added at
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