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Warning when missing "sex" in phenotype file #6

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amstilp opened this issue Oct 11, 2023 · 0 comments
Open

Warning when missing "sex" in phenotype file #6

amstilp opened this issue Oct 11, 2023 · 0 comments

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@amstilp
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amstilp commented Oct 11, 2023 •
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Some of the GENESIS and SeqVarTools methods don't work correctly for sex chromosomes when "sex" is not a variable in the phenotype annotated data frame. Would it be helpful to add a warning either in the SeqVarData constructor or the validateSex method if "sex" is not in the annotation or if it is coded differently than expected?
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