docs: clarify the channel priority in environment definition deployment.rst #2352
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huzuner
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Please feel free to close the PR if I failed to see this or related information somewhere in the whole documentation. |
johanneskoester
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Jul 12, 2023
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Kudos, SonarCloud Quality Gate passed!
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johanneskoester
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Jul 21, 2023
🤖 I have created a release *beep* *boop* --- ## [7.30.2](v7.30.1...v7.30.2) (2023-07-20) ### Bug Fixes * do not allow setting benchmark and between-workflow caching for the same rule. The reason is that when the result is taken from cache, there is no way to fill the benchmark file with any reasonable values. ([#2335](#2335)) ([e2d64fa](e2d64fa)) * ensure lazy evaluation of resource functions/callables (this also entails, for now, a removal of the thread statistics in the yellow job stats table); further, added some clarifying sentences about resource function evaluation to the docs ([#2356](#2356)) ([4c591b7](4c591b7)) * handle non-PEP440 versions of apptainer/singulariy ([#2337](#2337)) ([dea6ba8](dea6ba8)) * remote GS builds too many inventories; io:collect_mtime always uses uncached mtime ([#2266](#2266)) ([bad9115](bad9115)) * Solve apptainer version issue ([#2333](#2333)) ([a876e0f](a876e0f)) * SyntaxWarnings due to non-raw regex pattern strings ([#2359](#2359)) ([a08c0b0](a08c0b0)) ### Documentation * clarify minimum Snakemake version for profiles ([86dc277](86dc277)) * clarify the channel priority in environment definition deployment.rst ([#2352](#2352)) ([76aa964](76aa964)) * fix typo (stackoverflow issue) ([#2365](#2365)) ([f770984](f770984)) * note on using checkpoint mechanism only for input function, not for params or resources. ([#2353](#2353)) ([4be2f9d](4be2f9d)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Description
In Snakemake documentation, the priority of channels is not known to the user in environment definitions. I attempted to make this information explicit in case people with little knowledge of conda have issues with it.
QC
docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).