fix: fix quoting issues when passing complex apptainer args to spawned jobs #2898
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johanneskoester
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May 27, 2024
🤖 I have created a release *beep* *boop* --- ## [8.12.0](v8.11.6...v8.12.0) (2024-05-27) ### Features * Include parameters in extended benchmarks ([#2887](#2887)) ([31a9c9b](31a9c9b)) ### Bug Fixes * fix corner case bug in input function exception handling ([#2895](#2895)) ([fc24292](fc24292)) * fix quoting issues when passing complex apptainer args to spawned jobs ([#2898](#2898)) ([b07e2e0](b07e2e0)) * properly restrict scheduler if --jobs/-j is used (in contrast to --cores) in local execution ([#2897](#2897)) ([6a276bb](6a276bb)) * typo in workflow specific profile default location ([#2878](#2878)) ([74627d3](74627d3)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Fixes #2808 and #2872 by using base64 encoding when passing apptainer args to spawned jobs.
QC
docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).