fix compilation error in FDR

CMakeLists.txt

@@ -31,4 +31,4 @@ add_subdirectory (src/init init)
 add_subdirectory (src/seq_generator seq_generator)
 add_subdirectory (src/seq_scoring seq_scoring)
 add_subdirectory (src/refinement bamm)
-add_subdirectory (src/evaluation fdr)
+add_subdirectory (src/evaluation evaluation)

src/evaluation/CMakeLists.txt

@@ -1,8 +1,9 @@
 file(GLOB SOURCES *.cpp *.h ../refinement/EM.* ../refinement/GibbsSampling.*)
+
 add_executable (FDR ${SOURCES})
 
 target_link_libraries (FDR LINK_PUBLIC init)
 target_link_libraries (FDR LINK_PUBLIC seq_scoring)
 target_link_libraries (FDR LINK_PUBLIC seq_generator)
 
-add_library (fdr ${SOURCES})
+add_library (evaluation ${SOURCES})

src/getopt_pp/CMakeLists.txt

@@ -1,2 +1,3 @@
 file(GLOB SOURCES *.cpp *.h)
+
 add_library (getopt_pp ${SOURCES})

src/init/CMakeLists.txt

@@ -1,4 +1,3 @@
 file(GLOB SOURCES *.cpp *.h)
-add_library (init ${SOURCES})
 
-target_include_directories (init PUBLIC ../sequences)
+add_library (init ${SOURCES})

src/refinement/CMakeLists.txt

@@ -1,9 +1,10 @@
 file(GLOB SOURCES *.cpp *.h)
+
 add_executable (BaMMmotif ${SOURCES})
 
 target_link_libraries (BaMMmotif LINK_PUBLIC getopt_pp)
 target_link_libraries (BaMMmotif LINK_PUBLIC init)
-target_link_libraries (BaMMmotif LINK_PUBLIC fdr)
+target_link_libraries (BaMMmotif LINK_PUBLIC evaluation)
 target_link_libraries (BaMMmotif LINK_PUBLIC seq_scoring)
 target_link_libraries (BaMMmotif LINK_PUBLIC seq_generator)
 

src/seq_scoring/CMakeLists.txt

@@ -1,4 +1,5 @@
 file(GLOB SOURCES *.cpp *.h ../seq_generator/SeqGenerator.*)
+
 add_executable (BaMMScan ${SOURCES})
 
 target_link_libraries (BaMMScan LINK_PUBLIC init)