changed default values nucleotide and hybrid assembler workflow

soedinglab · Aug 13, 2020 · 39c9b0a · 39c9b0a
1 parent dce1fe1
commit 39c9b0a
Show file tree

Hide file tree

Showing 4 changed files with 6 additions and 6 deletions.
diff --git a/src/workflow/HybridassembleDB.cpp b/src/workflow/HybridassembleDB.cpp
@@ -9,9 +9,9 @@
 
 void setHybridAssemblerWorkflowDefaults(LocalParameters *p) {
 
-    p->multiNumIterations = MultiParam<int>(12,20);
+    p->multiNumIterations = MultiParam<int>(5,5);
     p->multiKmerSize = MultiParam<int>(14,22);
-    p->multiSeqIdThr = MultiParam<float>(0.97,0.97);
+    p->multiSeqIdThr = MultiParam<float>(0.97,0.99);
     p->alphabetSize = MultiParam<int>(13,5);
 
     p->orfMinLength = 45;

diff --git a/src/workflow/Hybridassembler.cpp b/src/workflow/Hybridassembler.cpp
@@ -16,9 +16,9 @@ namespace hybridassembler {
 void setEasyHybridAssemblerWorkflowDefaults(LocalParameters *p) {
     //p->createdbMode = Parameters::SEQUENCE_SPLIT_MODE_SOFT;
 
-    p->multiNumIterations = MultiParam<int>(12,20);
+    p->multiNumIterations = MultiParam<int>(5,5);
     p->multiKmerSize = MultiParam<int>(14,22);
-    p->multiSeqIdThr = MultiParam<float>(0.97,0.97);
+    p->multiSeqIdThr = MultiParam<float>(0.97,0.99);
     p->alphabetSize = MultiParam<int>(13,5);
 
     p->orfMinLength = 45;

diff --git a/src/workflow/NuclassembleDB.cpp b/src/workflow/NuclassembleDB.cpp
@@ -23,7 +23,7 @@ void setNuclAssemblerWorkflowDefaults(LocalParameters *p) {
     p->maskMode = 0;
     p->numIterations = 12;
     p->rescoreMode = Parameters::RESCORE_MODE_GLOBAL_ALIGNMENT;
-    p->seqIdThr = 0.97;
+    p->seqIdThr = 0.99;
     p->spacedKmer = false;
 }
 

diff --git a/src/workflow/Nuclassembler.cpp b/src/workflow/Nuclassembler.cpp
@@ -27,7 +27,7 @@ void setEasyNuclAssemblerWorkflowDefaults(LocalParameters *p) {
     p->maskMode = 0;
     p->numIterations = 12;
     p->rescoreMode = Parameters::RESCORE_MODE_GLOBAL_ALIGNMENT;
-    p->seqIdThr = 0.97;
+    p->seqIdThr = 0.99;
     p->spacedKmer = false;
 }