accepted aye-aye

A busy year and I forgot to make a new release, so now that PROSSTT is published here it is.

major changes:

• new sampling strategies (density sampling, velocity sampling)
• can simulate non-informative genes
• added a lot of example notebooks
• cell size now can vary
• added option for delayed commitment branching ("probabilistic branching")
• PROSSTT can learn hyperparameters from data now

minor changes:

• updated documentation, moved to readthedocs
• now supports newick input and file format (thanks @scottgigante)
• branch naming works better now
• improved how expression programs get sampled, can mostly avoid extreme cases that distort sims

prosstt-conda

- correct_parallel can now handle branches of differing lengths

- made concatenating of numpy arrays more elegant and foolproof
(case of arrays with differing lengths)

v1.1

fixing conda recipe

prosstt

Merge pull request #2 from soedinglab/dev

merge actual final state of dev

Version 0.6.6

The state of PROSSTT used for the simulations in the MERLoT paper