[MRG] Fix containment calculation for nodegraphs #1862
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Change looks good - no tests? |
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## latest #1862 +/- ##
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+ Coverage 82.26% 82.36% +0.10%
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Files 119 119
Lines 12918 12929 +11
Branches 1727 1727
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+ Hits 10627 10649 +22
+ Misses 2027 2016 -11
Partials 264 264
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luizirber
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Mar 5, 2022
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| #[test] | ||
| fn containment() { | ||
| let mut ng1: Nodegraph = Nodegraph::new(&[31], 3); | ||
| let mut ng2: Nodegraph = Nodegraph::new(&[31], 3); | ||
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| (0..20).for_each(|i| { | ||
| if i % 2 == 0 { | ||
| ng1.count(i); | ||
| }; | ||
| ng2.count(i); | ||
| }); | ||
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| assert_eq!(ng1.containment(&ng2), 1.0); | ||
| assert_eq!(ng1.similarity(&ng2), 0.5); | ||
| assert_eq!(ng1.unique_kmers(), 10); | ||
| assert_eq!(ng2.unique_kmers(), 20); | ||
| } | ||
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You might think after all these years I would not mess how to calculate containment from a Bloom Filter. Sadly, you are mistaken. Sigh.
This also means that #1138 probably works properly now 馃檲
Ready for review and merge @sourmash-bio/devs