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Temporary branch for a metagenome workshop at UCSC #188

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wants to merge 23 commits into from
Closed

Temporary branch for a metagenome workshop at UCSC #188

wants to merge 23 commits into from

Commits on Apr 17, 2017

  1. enrich -o output, provide column headers, eliminate --csv on sbt_gather

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    ctb committed Apr 17, 2017
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  2. fix tests, add --save-matches test

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    ctb committed Apr 17, 2017
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Commits on Apr 19, 2017

  1. simplify sbt_gather a bit by doing legacy hll compute in minhash max_… 

    …hash property
    @ctb
    ctb committed Apr 19, 2017
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  2. hackity hack add in downsample

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    ctb committed Apr 19, 2017
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  3. Merge branch 'master' of github.com:dib-lab/sourmash into update/gath… 

    …er_out
    @ctb
    ctb committed Apr 19, 2017
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  4. add in containment

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    ctb committed Apr 19, 2017
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Commits on Apr 22, 2017

  1. Merge branch 'fix/sbt_search' into 2017-ucsc-metagenome

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    ctb committed Apr 22, 2017
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  2. fix legacy max_hash

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    ctb committed Apr 22, 2017
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  3. Merge branch 'fix/sbt_search' into 2017-ucsc-metagenome

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    ctb committed Apr 22, 2017
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  4. fixed some super dumb errors in sourmash sbt_gather

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    ctb committed Apr 22, 2017
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  5. Merge branch 'update/gather_out' into 2017-ucsc-metagenome

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    ctb committed Apr 22, 2017
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  6. fix print -> notify

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    ctb committed Apr 22, 2017
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  7. Merge branch 'update/gather_out' into 2017-ucsc-metagenome

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    ctb committed Apr 22, 2017
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  8. fix notifications

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    ctb committed Apr 22, 2017
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  9. Merge branch 'update/gather_out' into 2017-ucsc-metagenome

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    ctb committed Apr 22, 2017
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  10. matplotlib fix

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    ctb committed Apr 22, 2017
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  11. Merge branch 'update/gather_out' into 2017-ucsc-metagenome

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    ctb committed Apr 22, 2017
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Commits on Apr 23, 2017

  1. avoid printing out really large matrices

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    ctb committed Apr 23, 2017
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  2. Merge branch 'update/gather_out' into 2017-ucsc-metagenome

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    ctb committed Apr 23, 2017
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Commits on Apr 24, 2017

  1. update output format

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    ctb committed Apr 24, 2017
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Commits on May 2, 2017

  1. fix sbt_search --best-only

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    ctb committed May 2, 2017
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  2. clean up sbt_search output a bit

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    ctb committed May 2, 2017
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Commits on May 9, 2017

  1. Merge branch 'fix/sbt_search' of github.com:dib-lab/sourmash into 201… 

    …7-ucsc-metagenome
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    ctb committed May 9, 2017
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