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ModelObject() threadsafety? #167

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mathjeff opened this issue Apr 21, 2023 · 7 comments
Closed

ModelObject() threadsafety? #167

mathjeff opened this issue Apr 21, 2023 · 7 comments

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@mathjeff
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mathjeff commented Apr 21, 2023 •
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AndroidX is trying out https://github.com/spdx/spdx-gradle-plugin and finding that occasionally ./gradlew spdxSbomForRelease fails with a stacktrace that looks like this:



> Task :annotation:annotation-experimental:spdxSbomForRelease FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':annotation:annotation-experimental:spdxSbomForRelease'.
> org.spdx.library.model.DuplicateSpdxIdException: ID NOASSERTION_LICENSE_ID already exists.

* Try:
> Run with --info or --debug option to get more log output.

* Exception is:
org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':annotation:annotation-experimental:spdxSbomForRelease'.
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.lambda$executeIfValid$1(ExecuteActionsTaskExecuter.java:149)
        at org.gradle.internal.Try$Failure.ifSuccessfulOrElse(Try.java:282)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:147)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:135)
        at org.gradle.api.internal.tasks.execution.FinalizePropertiesTaskExecuter.execute(FinalizePropertiesTaskExecuter.java:46)
        at org.gradle.api.internal.tasks.execution.ResolveTaskExecutionModeExecuter.execute(ResolveTaskExecutionModeExecuter.java:51)
        at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:57)
        at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:74)
        at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.executeTask(EventFiringTaskExecuter.java:77)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:55)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:52)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:204)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:199)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.call(DefaultBuildOperationRunner.java:53)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:73)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter.execute(EventFiringTaskExecuter.java:52)
        at org.gradle.execution.plan.LocalTaskNodeExecutor.execute(LocalTaskNodeExecutor.java:42)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:338)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:325)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:318)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:304)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.execute(DefaultPlanExecutor.java:463)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.run(DefaultPlanExecutor.java:380)
        at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
        at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:49)
Caused by: org.gradle.internal.UncheckedException: org.spdx.library.model.DuplicateSpdxIdException: ID NOASSERTION_LICENSE_ID already exists.
        at org.gradle.internal.UncheckedException.throwAsUncheckedException(UncheckedException.java:68)
        at org.gradle.internal.UncheckedException.throwAsUncheckedException(UncheckedException.java:41)
        at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:128)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.doExecute(StandardTaskAction.java:58)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:51)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:29)
        at org.gradle.api.internal.tasks.execution.TaskExecution$3.run(TaskExecution.java:242)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$1.execute(DefaultBuildOperationRunner.java:29)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$1.execute(DefaultBuildOperationRunner.java:26)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.run(DefaultBuildOperationRunner.java:47)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:68)
        at org.gradle.api.internal.tasks.execution.TaskExecution.executeAction(TaskExecution.java:227)
        at org.gradle.api.internal.tasks.execution.TaskExecution.executeActions(TaskExecution.java:210)
        at org.gradle.api.internal.tasks.execution.TaskExecution.executeWithPreviousOutputFiles(TaskExecution.java:193)
        at org.gradle.api.internal.tasks.execution.TaskExecution.execute(TaskExecution.java:166)
        at org.gradle.internal.execution.steps.ExecuteStep.executeInternal(ExecuteStep.java:93)
        at org.gradle.internal.execution.steps.ExecuteStep.access$000(ExecuteStep.java:44)
        at org.gradle.internal.execution.steps.ExecuteStep$1.call(ExecuteStep.java:57)
        at org.gradle.internal.execution.steps.ExecuteStep$1.call(ExecuteStep.java:54)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:204)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:199)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.call(DefaultBuildOperationRunner.java:53)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:73)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:54)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:44)
        at org.gradle.internal.execution.steps.RemovePreviousOutputsStep.execute(RemovePreviousOutputsStep.java:67)
        at org.gradle.internal.execution.steps.RemovePreviousOutputsStep.execute(RemovePreviousOutputsStep.java:37)
        at org.gradle.internal.execution.steps.CancelExecutionStep.execute(CancelExecutionStep.java:41)
        at org.gradle.internal.execution.steps.TimeoutStep.executeWithoutTimeout(TimeoutStep.java:74)
        at org.gradle.internal.execution.steps.TimeoutStep.executeWithTimeout(TimeoutStep.java:62)
        at org.gradle.internal.execution.steps.TimeoutStep.execute(TimeoutStep.java:53)
        at org.gradle.internal.execution.steps.CreateOutputsStep.execute(CreateOutputsStep.java:50)
        at org.gradle.internal.execution.steps.CreateOutputsStep.execute(CreateOutputsStep.java:28)
        at org.gradle.internal.execution.steps.CaptureStateAfterExecutionStep.executeDelegateBroadcastingChanges(CaptureStateAfterExecutionStep.java:100)
        at org.gradle.internal.execution.steps.CaptureStateAfterExecutionStep.execute(CaptureStateAfterExecutionStep.java:72)
        at org.gradle.internal.execution.steps.CaptureStateAfterExecutionStep.execute(CaptureStateAfterExecutionStep.java:50)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:40)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:29)
        at org.gradle.internal.execution.steps.BuildCacheStep.executeWithoutCache(BuildCacheStep.java:166)
        at org.gradle.internal.execution.steps.BuildCacheStep.lambda$execute$1(BuildCacheStep.java:70)
        at org.gradle.internal.Either$Right.fold(Either.java:175)
        at org.gradle.internal.execution.caching.CachingState.fold(CachingState.java:59)
        at org.gradle.internal.execution.steps.BuildCacheStep.execute(BuildCacheStep.java:68)
        at org.gradle.internal.execution.steps.BuildCacheStep.execute(BuildCacheStep.java:46)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:36)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:25)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:36)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:22)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.executeBecause(SkipUpToDateStep.java:91)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.lambda$execute$2(SkipUpToDateStep.java:55)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:55)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:37)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:65)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:36)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:37)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:27)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:76)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:37)
        at org.gradle.internal.execution.steps.ValidateStep.execute(ValidateStep.java:94)
        at org.gradle.internal.execution.steps.ValidateStep.execute(ValidateStep.java:49)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:71)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:45)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.executeWithNonEmptySources(SkipEmptyWorkStep.java:177)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:81)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:53)
        at org.gradle.internal.execution.steps.RemoveUntrackedExecutionStateStep.execute(RemoveUntrackedExecutionStateStep.java:32)
        at org.gradle.internal.execution.steps.RemoveUntrackedExecutionStateStep.execute(RemoveUntrackedExecutionStateStep.java:21)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsStartedStep.execute(MarkSnapshottingInputsStartedStep.java:38)
        at org.gradle.internal.execution.steps.LoadPreviousExecutionStateStep.execute(LoadPreviousExecutionStateStep.java:36)
        at org.gradle.internal.execution.steps.LoadPreviousExecutionStateStep.execute(LoadPreviousExecutionStateStep.java:23)
        at org.gradle.internal.execution.steps.CleanupStaleOutputsStep.execute(CleanupStaleOutputsStep.java:75)
        at org.gradle.internal.execution.steps.CleanupStaleOutputsStep.execute(CleanupStaleOutputsStep.java:41)
        at org.gradle.internal.execution.steps.AssignWorkspaceStep.lambda$execute$0(AssignWorkspaceStep.java:32)
        at org.gradle.api.internal.tasks.execution.TaskExecution$4.withWorkspace(TaskExecution.java:287)
        at org.gradle.internal.execution.steps.AssignWorkspaceStep.execute(AssignWorkspaceStep.java:30)
        at org.gradle.internal.execution.steps.AssignWorkspaceStep.execute(AssignWorkspaceStep.java:21)
        at org.gradle.internal.execution.steps.IdentityCacheStep.execute(IdentityCacheStep.java:37)
        at org.gradle.internal.execution.steps.IdentityCacheStep.execute(IdentityCacheStep.java:27)
        at org.gradle.internal.execution.steps.IdentifyStep.execute(IdentifyStep.java:42)
        at org.gradle.internal.execution.steps.IdentifyStep.execute(IdentifyStep.java:31)
        at org.gradle.internal.execution.impl.DefaultExecutionEngine$1.execute(DefaultExecutionEngine.java:64)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:146)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:135)
        at org.gradle.api.internal.tasks.execution.FinalizePropertiesTaskExecuter.execute(FinalizePropertiesTaskExecuter.java:46)
        at org.gradle.api.internal.tasks.execution.ResolveTaskExecutionModeExecuter.execute(ResolveTaskExecutionModeExecuter.java:51)
        at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:57)
        at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:74)
        at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.executeTask(EventFiringTaskExecuter.java:77)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:55)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:52)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:204)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:199)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
        at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
        at org.gradle.internal.operations.DefaultBuildOperationRunner.call(DefaultBuildOperationRunner.java:53)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:73)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter.execute(EventFiringTaskExecuter.java:52)
        at org.gradle.execution.plan.LocalTaskNodeExecutor.execute(LocalTaskNodeExecutor.java:42)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:338)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:325)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:318)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:304)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.execute(DefaultPlanExecutor.java:463)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.run(DefaultPlanExecutor.java:380)
        at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
        at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:49)
Caused by: org.spdx.library.model.DuplicateSpdxIdException: ID NOASSERTION_LICENSE_ID already exists.
        at org.spdx.storage.simple.InMemSpdxStore.create(InMemSpdxStore.java:121)
        at org.spdx.library.model.ModelObject.<init>(ModelObject.java:204)
        at org.spdx.library.model.ModelObject.<init>(ModelObject.java:176)
        at org.spdx.library.model.license.AnyLicenseInfo.<init>(AnyLicenseInfo.java:55)
        at org.spdx.library.model.license.SpdxNoAssertionLicense.<init>(SpdxNoAssertionLicense.java:43)
        at org.spdx.sbom.gradle.utils.SpdxDocumentBuilder.createProjectPackage(SpdxDocumentBuilder.java:231)
        at org.spdx.sbom.gradle.utils.SpdxDocumentBuilder.add(SpdxDocumentBuilder.java:182)
        at org.spdx.sbom.gradle.utils.SpdxDocumentBuilder.add(SpdxDocumentBuilder.java:153)
        at org.spdx.sbom.gradle.SpdxSbomTask.generateSbom(SpdxSbomTask.java:105)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:125)
        ... 114 more

So far we've only noticed this failure when parallelism is enabled (--max-workers > 1)

I believe that what is happening is that the Gradle plugin is calling SpdxNoAssertionLicense() from multiple threads at once, and that the code at

Spdx-Java-Library/src/main/java/org/spdx/library/model/ModelObject.java

Line 198 in da021df

if (existing.isPresent()) {
is checking the default model store multiple times for the existence of this object (each time finding it has not been created), and then each thread tries to create it at

Spdx-Java-Library/src/main/java/org/spdx/library/model/ModelObject.java

Line 204 in da021df

modelStore.create(documentUri, id, getType());
and the second creation fails.

Does it seem right for the spdx-gradle-plugin to access the default model store from several threads concurrently for writing several spdx documents? Is ModelObject() expected to be threadsafe?

Thanks!
@goneall
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goneall commented Apr 22, 2023

Does it seem right for the spdx-gradle-plugin to access the default model store from several threads concurrently for writing several spdx documents? Is ModelObject() expected to be threadsafe?

Yes - it should be thread-safe. From looking at the code, this does look like an issue with the library. I should be able to resolve this by wrapping the code with enter/exit critical section. I noticed a similar issue in the getObjectPropertyValue code.

I'll create a pull request to fix.

goneall added a commit that referenced this issue Apr 23, 2023
@goneall
Make ModelObject threadsafe on create and getObjectPropertyValue
fb8fc86 
Partial fix to issue #167

Signed-off-by: Gary O'Neall <gary@sourceauditor.com>
@goneall goneall mentioned this issue Apr 23, 2023
Merged
@goneall
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goneall commented Apr 23, 2023

Created PR #170 to resolve the immediate issue.

In reviewing the code, I found a couple potential issues not addressed in the PR: #169 and #168

@mathjeff let me know if you'd like a release of this fix. Note - it may also require a release of the RDF format store as well.

If it isn't too much effort, it would be great to test this out prior to release since the fix has a (low) probability of a deadlock.

@mathjeff
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Thanks! I'll get back to you soon about a doing a release if it's not too much trouble - in the meanwhile I'm double-checking that everything else about 1.1.6-SNAPSHOT works well for us ( so far the only other difficulty we've noticed is #171 )

@goneall
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goneall commented Apr 26, 2023

@mathjeff I just fixed #171 if you want to pull the latest.

Just FYI - I'll be away from the computer starting Saturday for a week - if you run into any other issues or if you'd like me to spin up a release I'll take care of it the week of the 6th.

@mathjeff
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Nice - as of #170 and #172 I'm not noticing any more problems

Having a release on the week of the 6th that would be awesome

Thanks!

@goneall
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goneall commented May 8, 2023

It looks like this is resolved, so closing the issue.

@goneall goneall closed this as completed May 8, 2023
@goneall
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goneall commented May 11, 2023

@mathjeff - FYI - I just finished a new release of the library and tools-java which includes this PR.

carmenerre added a commit to carmenerre/Spdx-Java-Library that referenced this issue May 31, 2023
@carmenerre
Preserve order in collections.
66787de 
Fixes spdx#167
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