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anno list

Rob Flickenger edited this page Aug 9, 2021 · 1 revision

To see a list of all available annotations, use biograph vdb anno list. This displays the annotation name, version, import date, reference build, annotation count, aid, and description for every available annotation.

$ biograph vdb anno list
anno_name    version      imported_on          build      annotations   aid                                  description
ClinVar      2020-10-03   2021-04-28 15:55:55  GRCh37     775850        c8d42e04-80ae-415d-a848-2b162dcb7f86
ClinVar      2020-10-03   2021-04-28 15:55:15  GRCh38     776050        ffff2168-89ac-4ff4-9ddd-788b26e4aa69
Ensembl      release-101  2021-04-29 14:52:55  GRCh38     2646896       ffd56a95-ef83-44aa-9df4-b12f389c94b3
dbSNP        151          2021-04-28 16:23:59  GRCh37     685132792     c50ed9ad-443b-4321-9f37-7348a99275ec

Getting more help

$ biograph vdb anno list --help
usage: biograph vdb anno list [-h]

List all available annotations

optional arguments:
  -h, --help  show this help message and exit
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