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This repository has been archived by the owner on Jan 24, 2024. It is now read-only.
Thanks for developing this powerful tool! I am testing with our own scRNAseq data. Everything works good by following the walkthrough vignette, until the 'identifyCommunicationPatterns' function:
Thanks for developing this powerful tool! I am testing with our own scRNAseq data. Everything works good by following the walkthrough vignette, until the 'identifyCommunicationPatterns' function:
nPatterns = 5
cellchat <- identifyCommunicationPatterns(cellchat, pattern = "outgoing", k = nPatterns)
Error in (new("standardGeneric", .Data = function (x) :
unused arguments (model = list("NMFstd", 5, 0), method = "nndsvd")
It looks like an error related to the calling of nmf function. Could you help debug this? Thanks!
Yu
Found the solution under NMF installing section. Issue solved. Please close this. Thanks.
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