Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Preprocessing error: "need at least 2 points to select a bandwidth automatically" #43

Open
EmilieCarneiro opened this issue Oct 17, 2022 · 0 comments

Comments

@EmilieCarneiro
Copy link

Hi,
First thanks for this great app that helps me alot with my proteomic analysis!
I am getting an error at the preprocessing step on a new dataset (from MaxQuant). In the Shiny App, I am getting the following error: "error: need at least 2 points to select a bandwidth automatically"

Could you please let me know what I am doing wrong and how I can solve the problem?
Please find below the details:

launchMsqrob2App()

Listening on http://127.0.0.1:6360
Warning: Unable to infer variable name for metaReactive because no srcref is available. Please report an issue to https://github.com/rstudio/shinymeta/issues/new
Warning: Error in density.default: need at least 2 points to select a bandwidth automatically
177: stop
176: density.default
173: apply
172: getDensXlimYlim
171: plotDens
170: renderPlot
168: func
128: drawPlot
114: reactive:plotObj
98: drawReactive
85: renderFunc
84: output$plotRaw
3: runApp
2: print.shiny.appobj
1:
Warning: 'experiments' dropped; see 'metadata'
harmonizing input:
removing 249 sampleMap rows not in names(experiments)
Warning: Error in density.default: need at least 2 points to select a bandwidth automatically
177: stop
176: density.default
173: apply
172: getDensXlimYlim
171: plotDens
170: renderPlot
168: func
128: drawPlot
114: reactive:plotObj
98: drawReactive
85: renderFunc
84: output$plotRaw
3: runApp
2: print.shiny.appobj
1:
Warning: Error in density.default: need at least 2 points to select a bandwidth automatically
177: stop
176: density.default
173: apply
172: getDensXlimYlim
171: plotDens
170: renderPlot
168: func
128: drawPlot
114: reactive:plotObj
98: drawReactive
85: renderFunc
84: output$plotNorm1
3: runApp
2: print.shiny.appobj
1:
Warning: Error in plotMDS.default: ndim is greater than number of rows of data
173: stop
172: plotMDS.default
170: renderPlot
168: func
128: drawPlot
114: reactive:plotObj
98: drawReactive
85: renderFunc
84: output$plotMDS
3: runApp
2: print.shiny.appobj
1:

image

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant