Create new analysis subtypes

[bradfordcondon]

Every analysis that requires custom fields needs a subtype.

tripal/tripal#224

[bradfordcondon]

term for transcriptome assembly (previously analysis_unigene): operation:3258

genome assembly: previously .... ? vanilla analysis : operation:0525

[bradfordcondon]

Problem with defining analysis unigene type:

the module did not utilize the analysis_type prop.

so we either a) have our unigene type depend on something else (ie analysis_unigene_name, which is what the module uses as the identifeir)….. buuuuut defining the type we say the prop is equal to something, not taht the prop exists

or b) insert the prop into all of our analysis unigene analyses

[bradfordcondon]

this update should work to make our existing unigene analyses have hte correct analysis type prop set

tripal/tripal_analysis_unigene#2

[bradfordcondon]

This task is addressed by this "module" which we only want for the install script.

https://github.com/bradfordcondon/tripal_manage_analyses

Normally we would just re-migrate the analyses, but since we've put a lot of work into manually re-adding node fields, we don't want to do that here.

This module will properly tag unigene analyses as transcriptomes or genomes based on their associated features, then migrate the entities from the plain analysis to the new type. It's not finished: something is wrong with my update query to the tripal_entity table.

If this is something we would want to regularly do , then the module could be built up to be more general converting one entity type to another based on some criterion.

[bradfordcondon]

Migrated for transcriptomes.

Genomes

Oops, these were analyses not analysis unigenes.
Let's manually set the analysis_type prop of these 8 genomes to genome_assembly and write an update that will just mirgate those entities
Prop updated for:

• Fraxinus excelsior 08-02-16
• Genome analysis Valley oak (Quercus lobata)
• de novo English Walnut (Juglans regia)
• Whole Genome Assembly and Annotation of Citrus Sinensis (JGI)
• Chinese Chestnut Analysis
• Chinese Chestnut Disease Resistant QTL Regions Analysis

[bradfordcondon]

Created and populated!

[bradfordcondon]

Note: We still need types for blast and interproscan annotation