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fusion@gene[AB]@ensemblId not filed in by importStarfusion #16
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I quickly concocted a work around, maybe this is of use to anyone (too much in a hurry to do this a as a proper pull request, sorry :-)
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Thank you!:) I've pushed a fix for this which will be available in chimeraviz version 1.4.2 of the release version of Bioconductor, and chimeraviz version 1.5.4 of the devel version of Bioconductor. |
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Hi,
in the latest version of
importStarfusion
function does not fill in theensemblId
slot of the fusion partners. Would be nice to have. This is using output from STAR-fusion 1.2.0 (run CentOS 7, 3.10.0-693.11.6.el7.x86_64), analyzed on Mac OSX (Darwin PMC-GEN003 15.6.0 Darwin Kernel Version 15.6.0: Tue Jan 9 20:12:05 PST 2018; root:xnu-3248.73.5~1/RELEASE_X86_64 x86_64 i386 MacBookPro12).The
LeftGene
andRightGene
columns of thestar-fusion.fusion_predictions.abridged.tsv
file look likeMT-ATP6^ENSG00000198899.2
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