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Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: #34

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asm16 opened this issue Jun 16, 2021 · 2 comments
Open

Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: #34

asm16 opened this issue Jun 16, 2021 · 2 comments

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@asm16
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asm16 commented Jun 16, 2021

Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: java.io.FileNotFoundException: C:\Users\TARUN\Desktop\ICON\fiji-win64\Fiji.app\scripts\MiNA_Analyze_Morphology.py (The system cannot find the file specified)
at org.scijava.script.ScriptInfo.parseParameters(ScriptInfo.java:294)
at org.scijava.module.AbstractModuleInfo.initParameters(AbstractModuleInfo.java:189)
at org.scijava.module.AbstractModuleInfo.inputMap(AbstractModuleInfo.java:139)
at org.scijava.module.AbstractModuleInfo.getInput(AbstractModuleInfo.java:73)
at org.scijava.module.DefaultModuleService.assignInputs(DefaultModuleService.java:456)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:239)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:208)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:189)
at org.scijava.script.DefaultScriptService.run(DefaultScriptService.java:187)
at org.scijava.script.DefaultScriptService.run(DefaultScriptService.java:173)
at MiNAgui.runMiNA(MiNAgui.java:126)
at MiNAgui.lambda$run$4(MiNAgui.java:233)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.Component.processMouseEvent(Component.java:6539)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
at java.awt.Component.processEvent(Component.java:6304)
at java.awt.Container.processEvent(Container.java:2239)
at java.awt.Component.dispatchEventImpl(Component.java:4889)
at java.awt.Container.dispatchEventImpl(Container.java:2297)
at java.awt.Component.dispatchEvent(Component.java:4711)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
at java.awt.Container.dispatchEventImpl(Container.java:2283)
at java.awt.Window.dispatchEventImpl(Window.java:2746)
at java.awt.Component.dispatchEvent(Component.java:4711)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
at java.awt.EventQueue$4.run(EventQueue.java:733)
at java.awt.EventQueue$4.run(EventQueue.java:731)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.io.FileNotFoundException: C:\Users\TARUN\Desktop\ICON\fiji-win64\Fiji.app\scripts\MiNA_Analyze_Morphology.py (The system cannot find the file specified)
at java.io.FileInputStream.open0(Native Method)
at java.io.FileInputStream.open(FileInputStream.java:195)
at java.io.FileInputStream.(FileInputStream.java:138)
at java.io.FileInputStream.(FileInputStream.java:93)
at java.io.FileReader.(FileReader.java:58)
at org.scijava.script.process.ScriptProcessorService.process(ScriptProcessorService.java:62)
at org.scijava.script.ScriptInfo.parseParameters(ScriptInfo.java:290)
... 47 more
[INFO] Reading available sites from https://imagej.net/
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: java.io.FileNotFoundException: C:\Users\TARUN\Desktop\ICON\fiji-win64\Fiji.app\scripts\MiNA_Analyze_Morphology.py (The system cannot find the file specified)
at org.scijava.script.ScriptInfo.parseParameters(ScriptInfo.java:294)
at org.scijava.module.AbstractModuleInfo.initParameters(AbstractModuleInfo.java:189)
at org.scijava.module.AbstractModuleInfo.inputMap(AbstractModuleInfo.java:139)
at org.scijava.module.AbstractModuleInfo.getInput(AbstractModuleInfo.java:73)
at org.scijava.module.DefaultModuleService.assignInputs(DefaultModuleService.java:456)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:239)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:208)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:189)
at org.scijava.script.DefaultScriptService.run(DefaultScriptService.java:187)
at org.scijava.script.DefaultScriptService.run(DefaultScriptService.java:173)
at MiNAgui.runMiNA(MiNAgui.java:126)
at MiNAgui.lambda$run$3(MiNAgui.java:205)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.Component.processMouseEvent(Component.java:6539)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
at java.awt.Component.processEvent(Component.java:6304)
at java.awt.Container.processEvent(Container.java:2239)
at java.awt.Component.dispatchEventImpl(Component.java:4889)
at java.awt.Container.dispatchEventImpl(Container.java:2297)
at java.awt.Component.dispatchEvent(Component.java:4711)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
at java.awt.Container.dispatchEventImpl(Container.java:2283)
at java.awt.Window.dispatchEventImpl(Window.java:2746)
at java.awt.Component.dispatchEvent(Component.java:4711)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
at java.awt.EventQueue$4.run(EventQueue.java:733)
at java.awt.EventQueue$4.run(EventQueue.java:731)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.io.FileNotFoundException: C:\Users\TARUN\Desktop\ICON\fiji-win64\Fiji.app\scripts\MiNA_Analyze_Morphology.py (The system cannot find the file specified)
at java.io.FileInputStream.open0(Native Method)
at java.io.FileInputStream.open(FileInputStream.java:195)
at java.io.FileInputStream.(FileInputStream.java:138)
at java.io.FileInputStream.(FileInputStream.java:93)
at java.io.FileReader.(FileReader.java:58)
at org.scijava.script.process.ScriptProcessorService.process(ScriptProcessorService.java:62)
at org.scijava.script.ScriptInfo.parseParameters(ScriptInfo.java:290)
... 47 more

@asm16 asm16 changed the title I am getting this everytime I submit a request Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Jun 16, 2021
@asm16
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asm16 commented Jun 16, 2021

How to resolve this issue?

@RodoVJ
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RodoVJ commented Jun 17, 2021

Hi!
As you can see from this part of the error:

C:\Users\TARUN\Desktop\ICON\fiji-win64\Fiji.app\scripts\MiNA_Analyze_Morphology.py (The system cannot find the file specified)

The program is looking for a file and can't find it in the path specified. Please make sure to go to that directory and check that the MiNA_Analyze_Morphology.py file is in fact there. Also please make sure to read the installing instructions at the end of the README of this repository to make sure you're placing all the files in their correct location.

Let me know how it goes!

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