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deps(python): bump snakemake from 8.11.0 to 8.11.4 in /dependencies/python #5635

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@dependabot dependabot bot commented on behalf of github May 13, 2024

Bumps snakemake from 8.11.0 to 8.11.4.

Release notes

Sourced from snakemake's releases.

v8.11.4

8.11.4 (2024-05-11)

Bug Fixes

  • fix missing await when opening checkpoint output (#2868) (25a361b)
  • make checkpoint updates synchronous (#2871) (b0e7ebd)

Documentation

  • update code of conduct email address (3047683)

v8.11.3

8.11.3 (2024-05-03)

Bug Fixes

  • ignore errors when cleaning up runtime cache (#2859) (6df7046)
  • show queries of remote storage files instead of local paths in summary (#2860) (ba1db8e)

v8.11.2

8.11.2 (2024-05-02)

Bug Fixes

  • bug when requesting extended benchmark with slurm (#2855) (0e039ff)

v8.11.1

8.11.1 (2024-04-29)

Bug Fixes

  • check template rendering output for leaked input file paths (#2850) (433302e)
  • do not distinguish between local and remote rules in dryrun (74b99ec)
  • omit norun jobs when determining remote storage input file retrieval (#2854) (37a7c7f)
  • Prevent binary log files to crash snakemake execution with show-failed-logs (#2827) (8a80bda)
  • replace pkg_resources for python 3.12 (#2831) (ac144fc)
  • return set instead of list when just --quiet (#2829) (eeb57e2)
  • small typo in error (#2853) (325a715)
  • use keyword arguments in _IOFile.open (#2847) (50c84dc)

Documentation

Changelog

Sourced from snakemake's changelog.

8.11.4 (2024-05-11)

Bug Fixes

  • fix missing await when opening checkpoint output (#2868) (25a361b)
  • make checkpoint updates synchronous (#2871) (b0e7ebd)

Documentation

  • update code of conduct email address (3047683)

8.11.3 (2024-05-03)

Bug Fixes

  • ignore errors when cleaning up runtime cache (#2859) (6df7046)
  • show queries of remote storage files instead of local paths in summary (#2860) (ba1db8e)

8.11.2 (2024-05-02)

Bug Fixes

  • bug when requesting extended benchmark with slurm (#2855) (0e039ff)

8.11.1 (2024-04-29)

Bug Fixes

  • check template rendering output for leaked input file paths (#2850) (433302e)
  • do not distinguish between local and remote rules in dryrun (74b99ec)
  • omit norun jobs when determining remote storage input file retrieval (#2854) (37a7c7f)
  • Prevent binary log files to crash snakemake execution with show-failed-logs (#2827) (8a80bda)
  • replace pkg_resources for python 3.12 (#2831) (ac144fc)
  • return set instead of list when just --quiet (#2829) (eeb57e2)
  • small typo in error (#2853) (325a715)
  • use keyword arguments in _IOFile.open (#2847) (50c84dc)

Documentation

Commits
  • 0e47d6d chore(main): release 8.11.4 (#2870)
  • b0e7ebd fix: make checkpoint updates synchronous (#2871)
  • 25a361b fix: fix missing await when opening checkpoint output (#2868)
  • 3047683 docs: update code of conduct email address
  • 4a4eb40 chore(main): release 8.11.3 (#2863)
  • e43cfe3 ci: mark issues and PRs as stale (#2554)
  • 6df7046 fix: ignore errors when cleaning up runtime cache (#2859)
  • ba1db8e fix: show queries of remote storage files instead of local paths in summary (...
  • dd53319 chore(main): release 8.11.2 (#2858)
  • 0e039ff fix: bug when requesting extended benchmark with slurm (#2855)
  • Additional commits viewable in compare view

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Bumps [snakemake](https://github.com/snakemake/snakemake) from 8.11.0 to 8.11.4.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v8.11.0...v8.11.4)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label May 13, 2024
@dependabot dependabot bot requested a review from ferrarimarco as a code owner May 13, 2024 13:26
@dependabot dependabot bot added the python Pull requests that update Python code label May 13, 2024
@github-actions github-actions bot enabled auto-merge May 13, 2024 13:26
@ferrarimarco ferrarimarco added this to the 6.5.0 milestone May 13, 2024
@github-actions github-actions bot added this pull request to the merge queue May 13, 2024
Merged via the queue into main with commit a08197e May 13, 2024
96 checks passed
@dependabot dependabot bot deleted the dependabot/pip/dependencies/python/snakemake-8.11.4 branch May 13, 2024 14:08
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