Integration of RRPlugins with libRoadRunner

.travis.yml

@@ -5,15 +5,13 @@ language: cpp
 
 notifications:
   email:
-      - jkmtravisnotify@gmail.com
+      - debashish.roy1998@gmail.com
 
 compiler: gcc
 
 branches:
   only:
-    - develop
-    - master
-
+    - plugins
 
 before_install:
   # print the distro information

AUTHORS.txt

@@ -39,4 +39,4 @@ Redesign of the integrator interface was done by
 
     Wilbert Copeland
 
-For more information visit libroadrunner.org
+For more information visit libroadrunner.org

CMakeLists.txt

@@ -47,6 +47,56 @@ SET(CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake/ ${CMAKE_MODULE_PATH})
 # TODO: add some logic to automatically set based on compiler version
 set(RR_USE_CXX11 FALSE CACHE BOOL "Set to TRUE to enable C++11 features")
 
+#plugins
+set ( RRP_PLUGINS_DIR site-packages/roadrunner CACHE PATH "Destination for plugins")
+
+set(RR_PLUGINS_INSTALL_TO_RR_SITE_PACKAGES site-packages/roadrunner 
+    CACHE PATH "Destination for telplugins_C_cpi")
+
+set (TLP_GENERATED_HEADER_PATH ${CMAKE_CURRENT_BINARY_DIR}/rrplugins )
+
+set ( TLP_BUILD_EXAMPLES   OFF CACHE BOOL   "Build examples" )
+
+set ( TLP_BUILD_BETA_PLUGINS  OFF CACHE BOOL      "Build beta (unreleased) plugins" )
+
+set ( TLP_BUILD_PLUGINS_PYTHON_API OFF CACHE BOOL "Build Plugins Python API") 
+
+# Plugin selection: Released
+
+set (TLP_BUILD_TEST_MODEL_PLUGIN ON CACHE BOOL "Build the Test Model Plugin")
+set (TLP_BUILD_ADD_NOISE_PLUGIN ON CACHE BOOL "Build the Add Noise Plugin")
+set (TLP_BUILD_CHISQUARE_PLUGIN ON CACHE BOOL "Build the ChiSquare Plugin")
+set (TLP_BUILD_LEVENBERG_MARQUARDT_PLUGIN ON CACHE BOOL "Build the Levenberg-Marquardt Plugin")
+set (TLP_BUILD_NELDER_MEAD_PLUGIN ON CACHE BOOL "Build the Nelder-Mead Plugin")
+set (TLP_BUILD_AUTO2000_PLUGIN ON CACHE BOOL "Build the Auto 2000 Plugin")
+
+set(BUILD_PLUGINS_ONLY OFF CACHE BOOL "Build Plugin ONLY not roadrunner")
+
+# Flags
+if( MSVC )
+  add_definitions(
+    -DPOCO_NO_AUTOMATIC_LIBS
+    -DCRT_NONSTDC_NO_DEPRECATE
+    -D_CRT_SECURE_NO_WARNINGS      # MS wanting you to change basically all standard C functions :(
+    )
+
+  #  4251 About exporting std classes
+  #  4018 Comparing unsigned/signed ints
+  #  4996 Deprecated functions
+  add_definitions( "/wd4251 /wd4018 /wd4996 /nologo" )
+
+  set (CMAKE_CXX_FLAGS             "${CMAKE_CXX_FLAGS} /EHsc ")
+  set (CMAKE_SHARED_LINKER_FLAGS   "${CMAKE_SHARED_LINKER_FLAGS} ") #/FORCE:MULTIPLE")
+endif()
+
+if(BUILD_PLUGINS_ONLY)
+    message("Please make sure roadrunner is already installed")
+    link_directories(${CMAKE_INSTALL_PREFIX}/lib)
+
+    add_subdirectory(plugins)
+    return()
+endif()
+
 set(LLVM_INSTALL_PREFIX CACHE PATH "If LLVM was built using CMake, this is the location where it was installed")
 
 # determine if LLVM was installed using CMake
@@ -132,7 +182,7 @@ OPTION (INSTALL_C_API           "Generate C API"
 OPTION (INSTALL_C_API_PYTHON    "Package ctypes  Python wrapper for the C API"   ON )
 OPTION (INSTALL_APPS            "Build and install Apps"                         ON )
 OPTION (INSTALL_EXAMPLES        "Build and install Examples"                     OFF)
-OPTION (INSTALL_STATIC_LIB      "Install RoadRunner CXX static lib"              OFF)
+OPTION (INSTALL_STATIC_LIB      "Install RoadRunner CXX static lib"              ON)
 OPTION (RR_BUILD_SHARED_CORE    "Build RoadRunner Core Shared library"           ON)
 OPTION (BUILD_TESTS             "Build the SBML C API test suite"                OFF)
 OPTION (INSTALL_SBML_MODELS     "Install SBML Models"                            ON )
@@ -148,6 +198,8 @@ set(THIRD_PARTY_FOLDER           ${CMAKE_CURRENT_SOURCE_DIR}/third_party)
 set(exe_path                     ${PROJECT_BINARY_DIR}/bin)
 set(lib_path                     ${PROJECT_BINARY_DIR}/lib)
 
+set ( RRP_PLUGINS_DIR site-packages/roadrunner CACHE PATH "Destination for plugins")
+
 message(STATUS "Using third party library prefix of ${THIRD_PARTY_INSTALL_FOLDER}")
 message(STATUS "Installing RoadRunner to ${CMAKE_INSTALL_PREFIX}")
 
@@ -192,6 +244,7 @@ endif()
 include_directories(
     ${RR_ROOT}
     ${THIRD_PARTY_FOLDER}
+    wrappers
 )
 
 # TODO libxml2 handling is excedingly hackish, it is all homegrown
@@ -203,14 +256,15 @@ if (WIN32)
 else()
     #UNIX
     find_package(LibXml2 REQUIRED)
-	message(STATUS "found libxml2, include dir: ${LIBXML2_INCLUDE_DIR}")
-	include_directories(${LIBXML2_INCLUDE_DIR})
+    message(STATUS "found libxml2, include dir: ${LIBXML2_INCLUDE_DIR}")
+    include_directories(${LIBXML2_INCLUDE_DIR})
 endif()
 
 find_library(LIBSBML_LIBRARY sbml libsbml HINTS ${THIRD_PARTY_INSTALL_FOLDER}/lib)
 find_library(LIBSBML_STATIC_LIBRARY sbml-static libsbml-static HINTS ${THIRD_PARTY_INSTALL_FOLDER}/lib ${THIRD_PARTY_INSTALL_FOLDER}/lib64)
 find_path(LIBSBML_INCLUDE_DIR sbml/SBMLTypes.h HINTS ${THIRD_PARTY_INSTALL_FOLDER}/include)
 
+
 # find libSBML deps
 
 if(WIN32)
@@ -253,22 +307,6 @@ else()
     )
 endif (${BUILD_LLVM})
 
-if(${MSVC})
-    add_definitions(
-        -DPOCO_NO_AUTOMATIC_LIBS
-        -DCRT_NONSTDC_NO_DEPRECATE
-        -D_CRT_SECURE_NO_WARNINGS    #MS wanting you to changes basically all standard C functions :(
-        )
-
-    #  4251 About exporting std classes
-    #  4018 Comparing unsigned/signed ints
-    #  4996 Deprecated functions
-    add_definitions( "/wd4251 /wd4018 /wd4996 /nologo" )
-
-    SET (CMAKE_CXX_FLAGS             "${CMAKE_CXX_FLAGS} /EHsc ")
-    SET (CMAKE_SHARED_LINKER_FLAGS     "${CMAKE_SHARED_LINKER_FLAGS} ") #/FORCE:MULTIPLE")
-
-endif()
 
 #=== COMPILER FLAGS
 #Common compiler definitions
@@ -322,30 +360,24 @@ message(STATUS "
 -------------------------------------------------------------------------------
 libRoadRunner Configuration Summary
 -------------------------------------------------------------------------------
-
     For up-to-date news and releases visit libroadrunner.org
-
     Configured on host $ENV{COMPUTERNAME} ${HOSTNAME}
       host OS                   ${CMAKE_SYSTEM_NAME}
       host architecture         ${CMAKE_SYSTEM_PROCESSOR}
-
     General flags:
       CC                        ${CMAKE_C_COMPILER}
       CXX                       ${CMAKE_CXX_COMPILER}
       CPPFLAGS                  ${BUILD_DEFINITIONS}
       CFLAGS                    ${CMAKE_C_FLAGS}
       CXXFLAGS                  ${CMAKE_CXX_FLAGS}
       LDFLAGS                   ${CMAKE_EXE_LINKER_FLAGS}
-
     Installation prefix:        ${CMAKE_INSTALL_PREFIX}
-
     Options:
       With LLVM?                ${BUILD_LLVM}
       With legacy C? (DEP)      ${BUILD_LEGACY_C}
       Enable Python interface?  ${BUILD_PYTHON}
       Enable Java interface?    ${BUILD_JAVA_INTERFACE}
       Enable test suite?        ${BUILD_TESTS}
-
     Dependencies (packages marked with *** are required):
     "
 )
@@ -360,6 +392,8 @@ message( "" )
 # We alway have to build the roadrunner core, everything depends on this
 add_subdirectory(source)
 
+add_subdirectory(plugins)
+
 # install the rr_support if building legacy c
 if(BUILD_LEGACY_C)
     add_subdirectory(rr_support)
@@ -429,7 +463,7 @@ if(INSTALL_CXX_API)
         COMPONENT rr_core)
 endif(INSTALL_CXX_API)
 
-install(FILES README.md LICENSE.txt AUTHORS.txt FUNDING.txt
+install(FILES README.md LICENSE.txt AUTHORS.txt FUNDING.txt RRP_AUTHORS.txt RRP_FUNDING.txt 
         DESTINATION .
         COMPONENT info
         )
@@ -467,4 +501,4 @@ endif(WIN32)
 
 if(WITH_CONDA_BUILDER)
   install(FILES assets/roadrunner-64x64-red.png DESTINATION assets)
-endif()
+endif()

RRP_AUTHORS.txt

@@ -0,0 +1,5 @@
+The Plugin Framework was designed and developed by
+
+    Totte Karlsson (totte@dunescientific.com) and H. M. Sauro (hsauro@uw.org)
+
+For more information please visit http://tellurium.analogmachine.org