Custom file upload error

[Maithy15]

Hi Sebastian,

I have a custom output file from DIA-NN. It seems to be getting uploaded successfully but when I press analyze it says no data uploaded. I have attached the files here. Could you please tell me what could be the problem?

Thanks
Maithy

amica_groups.txt
amica_specification.txt
Pel_Amica_Example.txt
amica_expt.txt

[tbaccata]

Hi Maithy,

the ... in the Pattern column of the example specification file is just be a placeholder,
columns that are missing in your data must not be declared in the specification file, which throws an error.

The file Pel_Amica_Example.txt contains 48 Intensity columns, but only 47 are declared in amica_expt.txt.
The 2nd sample in Pel_Amica_Example.txt M08_R1_Pel is missing in amica_expt.txt, amica fails to succesfully assign all samples to groups.

I've added the sample M08_R1_Pel to the group R1_Pel at the 2nd position of the file design.txt (hope that is correct).
design.txt

And I've attached you an appropriate specfication file.
specification.txt

Then it should work.

Best,
Sebastian

[Maithy15]

Hi Sebastian,

M08 was a mistake in the example file.

Thanks for the specification.txt

When I upload the example file it works fine but when I upload the full file it says no data uploaded again.

Thanks
Maithy

[Maithy15]

I will try a different file and let you know later.

[Maithy15]

Hi Sebastian,

I think there was some problem with the previous dataset I was using. It works now.

Thanks for the great app
Maithy