R crashes when using tidyr::unnest_wider #1348
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lionel-
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Apr 12, 2022
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@lionel- A more reliable reprex is: I've tested this with tidyr from CRAN and with tidtr 1.2.0.9000. It reliably crashes with both. |
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r-lib/vctrs#1553 should fix this |
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Is r-lib/vctrs#1553 included in v1.2.0.9000? This is the number given for the version I just pullled from the main github repo and it still crashes. |
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You'd have to run |
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Thanks! That works now. |
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The fix is now on CRAN, thanks for the reprex and report @mattnolan001 @bbolker! |
netbsd-srcmastr
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May 5, 2022
# vctrs 0.4.1 * OOB errors with `character()` indexes use "that don't exist" instead of "past the end" (#1543). * Fixed memory protection issues related to common type determination (#1551, tidyverse/tidyr#1348). # vctrs 0.4.0 * New experimental `vec_locate_sorted_groups()` for returning the locations of groups in sorted order. This is equivalent to, but faster than, calling `vec_group_loc()` and then sorting by the `key` column of the result. * New experimental `vec_locate_matches()` for locating where each observation in one vector matches one or more observations in another vector. It is similar to `vec_match()`, but returns all matches by default (rather than just the first), and can match on binary conditions other than equality. The algorithm is inspired by data.table's very fast binary merge procedure. * The `vec_proxy_equal()`, `vec_proxy_compare()`, and `vec_proxy_order()` methods for `vctrs_rcrd` are now applied recursively over the fields (#1503). * Lossy cast errors now inherit from incompatible type errors. * `vec_is_list()` now returns `TRUE` for `AsIs` lists (#1463). * `vec_assert()`, `vec_ptype2()`, `vec_cast()`, and `vec_as_location()` now use `caller_arg()` to infer a default `arg` value from the caller. This may result in unhelpful arguments being mentioned in error messages. In general, you should consider snapshotting vctrs error messages thrown in your package and supply `arg` and `call` arguments if the error context is not adequately reported to your users. * `vec_ptype_common()`, `vec_cast_common()`, `vec_size_common()`, and `vec_recycle_common()` gain `call` and `arg` arguments for specifying an error context. * `vec_compare()` can now compare zero column data frames (#1500). * `new_data_frame()` now errors on negative and missing `n` values (#1477). * `vec_order()` now correctly orders zero column data frames (#1499). * vctrs now depends on cli to help with error message generation. * New `vec_check_list()` and `list_check_all_vectors()` input checkers, and an accompanying `list_all_vectors()` predicate. * New `vec_interleave()` for combining multiple vectors together, interleaving their elements in the process (#1396). * `vec_equal_na(NULL)` now returns `logical(0)` rather than erroring (#1494). * `vec_as_location(missing = "error")` now fails with `NA` and `NA_character_` in addition to `NA_integer_` (#1420, @krlmlr). * Starting with rlang 1.0.0, errors are displayed with the contextual function call. Several vctrs operations gain a `call` argument that makes it possible to report the correct context in error messages. This concerns: - `vec_cast()` and `vec_ptype2()` - `vec_default_cast()` and `vec_default_ptype2()` - `vec_assert()` - `vec_as_names()` - `stop_` constructors like `stop_incompatible_type()` Note that default `vec_cast()` and `vec_ptype2()` methods automatically support this if they pass `...` to the corresponding `vec_default_` functions. If you throw a non-internal error from a non-default method, add a `call = caller_env()` argument in the method and pass it to `rlang::abort()`. * If `NA_character_` is specified as a name for `vctrs_vctr` objects, it is now automatically repaired to `""` (#780). * `""` is now an allowed name for `vctrs_vctr` objects and all its subclasses (`vctrs_list_of` in particular) (#780). * `list_of()` is now much faster when many values are provided. * `vec_as_location()` evaluates `arg` only in case of error, for performance (#1150, @krlmlr). * `levels.vctrs_vctr()` now returns `NULL` instead of failing (#1186, @krlmlr). * `vec_assert()` produces a more informative error when `size` is invalid (#1470). * `vec_duplicate_detect()` is a bit faster when there are many unique values. * `vec_proxy_order()` is described in `vignette("s3-vectors")` (#1373, @krlmlr). * `vec_chop()` now materializes ALTREP vectors before chopping, which is more efficient than creating many small ALTREP pieces (#1450). * New `list_drop_empty()` for removing empty elements from a list (#1395). * `list_sizes()` now propagates the names of the list onto the result. * Name repair messages are now signaled by `rlang::names_inform_repair()`. This means that the messages are now sent to stdout by default rather than to stderr, resulting in prettier messages. Additionally, name repair messages can now be silenced through the global option `rlib_name_repair_verbosity`, which is useful for testing purposes. See `?names_inform_repair` for more information (#1429). * `vctrs_vctr` methods for `na.omit()`, `na.exclude()`, and `na.fail()` have been added (#1413). * `vec_init()` is now slightly faster (#1423). * `vec_set_names()` no longer corrupts `vctrs_rcrd` types (#1419). * `vec_detect_complete()` now computes completeness for `vctrs_rcrd` types in the same way as data frames, which means that if any field is missing, the entire record is considered incomplete (#1386). * The `na_value` argument of `vec_order()` and `vec_sort()` now correctly respect missing values in lists (#1401). * `vec_rep()` and `vec_rep_each()` are much faster for `times = 0` and `times = 1` (@mgirlich, #1392). * `vec_equal_na()` and `vec_fill_missing()` now work with integer64 vectors (#1304). * The `xtfrm()` method for vctrs_vctr objects no longer accidentally breaks ties (#1354). * `min()`, `max()` and `range()` no longer throw an error if `na.rm = TRUE` is set and all values are `NA` (@gorcha, #1357). In this case, and where an empty input is given, it will return `Inf`/`-Inf`, or `NA` if `Inf` can't be cast to the input type. * `vec_group_loc()`, used for grouping in dplyr, now correctly handles vectors with billions of elements (up to `.Machine$integer.max`) (#1133).
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Running tidyr::unnest_wider as part of a pipe, R crashes with the following error reported,
Further description and discussion here: https://stackoverflow.com/questions/71820155/r-crashes-when-using-tidyrunnest-wider
Here is a reproducible example (with thanks to Ben Bolker):
The text was updated successfully, but these errors were encountered: