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I am having this issue with Leiden running a large an adjacency matrix generated from sNN as follows;
g <- buildSNNGraph(sce, k=20, use.dimred="PCA" ,BPPARAM=MulticoreParam(30), type="jaccard") g.am<-as_adjacency_matrix(g) str(g.am) Formal class 'dgCMatrix' [package "Matrix"] with 6 slots ..@ i : int [1:24346684] 851 1247 1353 2898 3266 3779 4053 4100 4360 4707 ... ..@ p : int [1:99193] 0 189 418 525 607 841 1034 1195 1408 1563 ... ..@ Dim : int [1:2] 99192 99192 ..@ Dimnames:List of 2 .. ..$ : NULL .. ..$ : NULL ..@ x : num [1:24346684] 1 1 1 1 1 1 1 1 1 1 ... ..@ factors : list()
partition<-leiden(g.am)
After about an hour of run, I run into a following error;
Error in r_to_py_impl(converted, convert = convert) : Evaluation error: 351 arguments passed to .Internal(.addCondHands) which requires 5.
if I set sNN k=10, Leiden works just fine but at k=20, it fails.
Any input will be appreciated.
The text was updated successfully, but these errors were encountered:
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I am having this issue with Leiden running a large an adjacency matrix generated from sNN as follows;
partition<-leiden(g.am)
After about an hour of run, I run into a following error;
if I set sNN k=10, Leiden works just fine but at k=20, it fails.
Any input will be appreciated.
The text was updated successfully, but these errors were encountered: