Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Adding a Median Filter for Non-Finite Values #566

Merged
merged 33 commits into from
Nov 11, 2021
Merged

Adding a Median Filter for Non-Finite Values #566

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
33 commits
Select commit Hold shift + click to select a range
a118409
Adding in median filter for non-finite values in 3D array
WilliamJudge94 Nov 1, 2021
cbe645e
Formatting for PEP8
WilliamJudge94 Nov 1, 2021
bd53fba
Updating PEP8v2
WilliamJudge94 Nov 1, 2021
7e8de93
Update source/tomopy/misc/corr.py
WilliamJudge94 Nov 1, 2021
79be52b
Update source/tomopy/misc/corr.py
WilliamJudge94 Nov 1, 2021
040be55
Updating median_filter_nonfinite to not require tqdm
WilliamJudge94 Nov 1, 2021
e5ee919
Accidentally left tqdm inside imports - removing with commit
WilliamJudge94 Nov 1, 2021
832a4b2
Adding function to __all__ and adding authors name
WilliamJudge94 Nov 1, 2021
d7d3e3e
Adding a CallbackClass to median_filter_nonfinite and adding testing …
WilliamJudge94 Nov 2, 2021
13578a8
Fixing test formatting for median_filter_nonfinite()
WilliamJudge94 Nov 2, 2021
6f79b9e
DOC: use consistent type descriptions
carterbox Nov 2, 2021
b869833
Use callback funtion instead of CallbackClass for median_filter_nonfi…
WilliamJudge94 Nov 2, 2021
850e045
Merge branch 'master' of github.com:WilliamJudge94/tomopy
WilliamJudge94 Nov 2, 2021
aa3a4c0
Correcting the median_filter_nonfinite function description
WilliamJudge94 Nov 2, 2021
70cf4e8
TST: Test all sorts of nonfinite values
carterbox Nov 2, 2021
afa195d
DOC: Refactor docstrings for median filter nonfinite
carterbox Nov 2, 2021
f33ebac
Updating median_filter_nonfinite test
WilliamJudge94 Nov 2, 2021
2383519
REF: Parameterize filter size consistently with other functions
carterbox Nov 2, 2021
2e8b430
TST: Test that all values are correct instead of just one
carterbox Nov 2, 2021
74aa99f
Adding self argument to test
WilliamJudge94 Nov 2, 2021
af94d9d
REF: Remove unnecessary variable declarations
carterbox Nov 2, 2021
7140bd7
BUG: it is valid for a range end to equal the shape
carterbox Nov 2, 2021
102d60e
STY: Format whitespace
carterbox Nov 2, 2021
6fc733c
Merge remote-tracking branch 'refs/remotes/WilliamJudge94/master' int…
carterbox Nov 2, 2021
05a887c
Replacing _determine_nonfinite_kernel_idxs with min()/max()
WilliamJudge94 Nov 4, 2021
2deaae4
Adding kernel ValueError to median_filter_nonfinite() + coorrespondin…
WilliamJudge94 Nov 4, 2021
4d2ce3b
BUG: Fixing variable name bug
WilliamJudge94 Nov 4, 2021
5c020e2
BUG: Prevent filter sweep in median_nonfinite
carterbox Nov 11, 2021
e5f82f7
STY: Wrap lines at 80 chars
carterbox Nov 11, 2021
4f6644a
STY: Remove unused parameters
carterbox Nov 11, 2021
79cff50
Merge branch 'master' into master
carterbox Nov 11, 2021
b642265
DOC: Update docs and match new API with existing filter funcs
carterbox Nov 11, 2021
301ee36
DOC: versionadded tags to documentation
carterbox Nov 11, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
3 changes: 2 additions & 1 deletion doc/source/api/tomopy.misc.corr.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,12 +9,13 @@
.. rubric:: **Functions:**

.. autosummary::

adjust_range
circ_mask
gaussian_filter
median_filter
median_filter_cuda
median_filter_nonfinite
sobel_filter
remove_nan
remove_neg
Expand Down