Fixing roxygen issues in RMD Check

[JackStat]

Please don't merge yet

[JackStat]

For the SBF type functions (caretSBF, lmSBF, etc.) they are a list and not a function but they each contain a function. This is causing some conflicts in the documentation because the params are in the function and not the list. Would it break if we made them functions that returned lists?

[topepo]

Would it break if we made them functions that returned lists?

Yeah, that would break things.

They are static in the sense that their "syntax" isn't going to change. Can we create a separate non-oxogen Rd file that contains these?

[coveralls]

Coverage remained the same at 14.813% when pulling 6a5a7d0 on JackStat:roxygen into 3fe3dc8 on topepo:master.

[JackStat]

Found what I needed to do. I just needed to point the anovaScores function to that set of documentation like it used to be

[coveralls]

Coverage remained the same at 14.813% when pulling 2dbc656 on JackStat:roxygen into 3fe3dc8 on topepo:master.

[topepo]

Let me know when you want me to merge. I've tracked down a few missing exports for resamples.R that crash the vignettes.

[coveralls]

Coverage increased (+0.007%) to 14.819% when pulling 4dd6dea on JackStat:roxygen into 3fe3dc8 on topepo:master.

[coveralls]

Coverage increased (+0.007%) to 14.819% when pulling 4dd6dea on JackStat:roxygen into 3fe3dc8 on topepo:master.

[JackStat]

Not sure how to fix these...

Undocumented arguments in documentation object 'caret-internal'
  ‘x’ ‘y’ ‘wts’ ‘method’ ‘tuneValue’ ‘obsLevels’ ‘pp’ ‘last’ ‘sampling’
  ‘classProbs’ ‘...’ ‘prefix’ ‘items’ ‘data’ ‘smoother’ ‘cut’ ‘pred’
  ‘obs’ ‘modelFit’ ‘newdata’ ‘preProc’ ‘param’ ‘ind’ ‘testX’ ‘testY’
  ‘sbfControl’ ‘object’ ‘top’ ‘names’ ‘iter’ ‘start’ ‘exclude’ ‘fixed’
  ‘seq’


Documented arguments not in \usage in documentation object 'twoClassSummary':
  ‘formula’ ‘na.rm’ ‘x’
... 27 lines ...

There are also a number of these types of warnings

S3 methods shown with full name in documentation object 'summary.bagEarth':
  ‘summary.bagEarth’

[coveralls]

Coverage increased (+0.007%) to 14.819% when pulling 27a97f4 on JackStat:roxygen into 3fe3dc8 on topepo:master.

[coveralls]

Coverage increased (+0.007%) to 14.819% when pulling 38218b6 on JackStat:roxygen into 3fe3dc8 on topepo:master.

[topepo]

Awesome. Thanks for all of the work. I'll merge