Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
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Updated
May 21, 2018 - Jupyter Notebook
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Nucleosome Dynamics wrappers for MuGVRE platform
DeepLncCTCF for identification and analysis of consensus RNA motifs binding to the genome regulator CTCF
Deep Learning of Sequence Patterns for CTCF-Mediated Chromatin Loop Formation
nuclear compartmentalization, 3D genome, nuclear bodies, MRF
Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
CBCR: A Curriculum Based Strategy For Chromosome Reconstruction
Processed data set of Miura et al., Nature Genetics, 2019
ChromeBat: A Bio-Inspired Approach to 3D Genome Reconstruction
Visual exploration of large genome interaction matrices with interactive small multiples.
Data and the co-authored network I extracted for lab selection in 3D genome research field
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