A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
-
Updated
Mar 26, 2024 - Python
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
Nextflow pipeline to process SARS-CoV-2 genomes by Nanopore Sequencing using ARTIC (https://github.com/artic-network/fieldbioinformatics) tools
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
Add a description, image, and links to the artic topic page so that developers can more easily learn about it.
To associate your repository with the artic topic, visit your repo's landing page and select "manage topics."