bacteria
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GET_HOMOLOGUES: a versatile software package for pan-genome analysis
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Jun 13, 2024 - Perl
💾 📃 "Reads to report" for public health and clinical microbiology
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Mar 19, 2024 - Perl
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
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Nov 6, 2023 - Perl
✂️ ⚡ Rapid haploid variant calling and core genome alignment
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Oct 18, 2023 - Perl
A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments
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Dec 1, 2020 - Perl
Identify phage regions in bacterial genomes for masking purposes
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Sep 5, 2019 - Perl
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