Various scripts for efficient processing of 10k Salmonella genomes
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Updated
Sep 16, 2021 - Shell
Various scripts for efficient processing of 10k Salmonella genomes
A snakemake workflow for downstream processing of WGS
Mapping, snps calling, phylogeny
bacterial metagenomes and pangenome graphs from both illumina and long reads
genome assembler for cleaning, mapping and assembling genomes.
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