R toolkit designed to enhance the process of cleaning up and visualizing clusters within a Seurat object, commonly used for scRNA-seq data analysis.
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Updated
May 25, 2023 - R
R toolkit designed to enhance the process of cleaning up and visualizing clusters within a Seurat object, commonly used for scRNA-seq data analysis.
An implementation of modified K-Means clustering on Biological Data (Proteins).
An application to find and visualize circadian rhythms in time course data using extended harmonic oscillators.
Introduction to CBSU server. A library of bioinformatics tools for data analyses and visualization.
R package specialized in HLA typing clustering and visualization based on specific similarity metrics.
Extract ITS and Neighboring Regions from Eukaryotic DNA Sequences
A Shiny app for plotting bedgraphs on short sequences.
A clinical decision-support system for Age-Related Macular Degeneration (AMD) based on genetic and non-genetic features. The paper has been published in the Journal of Personalized Medicine.
BioID-based subcellular protein localization tool. Publicly available web version accessible at the site below.
R package with convenience functions commonly requested in various types of genomic analysis within R.
Inter-sample analysis of SQANTI classifications
viral protein Diversity dynamics Visualization in R (vDiveR; https://protocol-viral-diversity.shinyapps.io/vDiveR/)
This repository is the code source for the RegOmics tool - Regulatory extraction for Omics data.
Primer design app for Lambda PCR reactions
BLASTr: an R package for parallel taxonomic classification of metabarcoding sequences
A collection of resources for common bioinformatics tasks and general lab information
DRAGGER: Drug Repositioning by Analysis of GWAS and Gene Expression in R (maintained version). For publication version, see https://github.com/AEstebanMar/DAGGER-publication
A shiny app for simple heatmap based on ComplexHeatmap
R package for the statistical detection of orthogroups associated to plant traits pointing to specific genes that might be present of absence and are good candidate genes responsible for the plant trait.
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